Table 3.
Portion of the List of the 330 Tags with Statistically Significant Differences Between Normal and Ts 65 Dn Male Drain SAGE Libraries
| TAG sequence | Ts65Dn | Normal | P | GenBank match | |||||||||
| T | C | C | C | C | G | C | A | C | A | 2 | 26 | 0.0000 | No match |
| A | A | A | T | T | A | T | T | G | G | 110 | 59 | 0.0000 | Proteolipid protein (myeline) |
| G | C | C | C | C | C | C | T | C | T | 104 | 54 | 0.0000 | No match |
| T | C | C | C | C | G | A | C | A | T | 9 | 38 | 0.0000 | No match |
| T | T | G | G | T | G | A | A | G | G | 19 | 52 | 0.0001 | Prothymosin β-4 |
| G | A | C | T | G | A | A | T | C | T | 12 | 39 | 0.0001 | Multiple matches |
| C | G | C | C | C | G | C | C | C | G | 65 | 30 | 0.0002 | Map1b |
| A | T | T | T | T | C | G | A | G | G | 34 | 10 | 0.0002 | ATPase, Na+K+ transporting β 1 polypeptide, Atp1b1 |
| A | A | T | T | C | G | C | G | G | A | 86 | 144 | 0.0002 | No match |
| T | C | C | C | C | G | T | A | C | G | 8 | 31 | 0.0002 | No match |
| G | A | A | A | G | T | T | G | G | C | 95 | 53 | 0.0002 | Apolipoprotein D |
| T | C | T | C | C | A | G | G | C | G | 38 | 77 | 0.0003 | Clusterin |
| C | T | G | C | T | A | T | C | C | G | 9 | 32 | 0.0003 | Ribosomal protein L5, 3′ end |
| A | A | C | G | G | G | A | G | G | T | 48 | 20 | 0.0003 | Scgn10 like-protein |
| C | A | G | C | T | C | T | G | C | C | 70 | 119 | 0.0004 | ESTs, weakly similar to NEUROGRANIN (Rattus norvegicus) |
| G | A | C | A | A | C | G | C | C | A | 17 | 44 | 0.0004 | ESTs, highly similar to ATP SYNTHASE γ CHAIN, MITOCHONDRIAL (R. norvegicus) |
| G | T | G | A | C | C | T | G | G | C | 169 | 115 | 0.0004 | Prostaglandin D2 synthase (21 kD, brain) |
| A | G | G | A | C | A | A | A | T | A | 102 | 62 | 0.0007 | Biotinidase |
| T | C | C | C | C | G | T | A | A | T | 2 | 16 | 0.0007 | No match |
| C | G | C | G | C | T | C | T | C | T | 29 | 9 | 0.0008 | No match |
| C | T | G | C | T | G | G | T | G | G | 30 | 10 | 0.0009 | GTP-binding protein associated protein 1 |
| G | C | C | A | T | C | C | C | G | G | 13 | 1 | 0.0009 | No match |
| C | A | G | G | T | G | A | G | C | C | 15 | 2 | 0.0010 | No match |
| C | G | C | A | G | T | C | C | C | C | 0 | 10 | 0.0010 | No match |
| T | C | G | G | C | G | T | G | G | A | 0 | 10 | 0.0010 | No match |
| G | T | T | G | C | T | G | A | G | A | 17 | 41 | 0.0014 | 24.6-kD protein (M93980) |
| G | A | C | G | G | C | T | A | A | A | 2 | 15 | 0.0015 | No match |
| T | C | C | C | C | C | G | T | A | C | 2 | 15 | 0.0015 | No match |
| T | T | T | T | G | A | G | T | G | A | 12 | 1 | 0.0016 | No match |
| G | C | G | C | C | A | G | C | T | C | 118 | 78 | 0.0016 | Ubiqutin C-terminal hydrolase L1 |
| A | A | A | C | G | A | A | A | G | T | 22 | 6 | 0.0017 | ESTs, highly similar to S-ADENOSYLMETHIONINE SYNTHETASE γ form (R. norvegicus) |
| G | C | G | G | G | C | A | C | C | A | 20 | 5 | 0.0017 | ESTs |
| A | C | A | G | G | A | A | G | G | A | 1 | 12 | 0.0018 | No match |
| A | C | T | T | C | G | T | C | C | A | 0 | 9 | 0.0019 | No match |
| G | A | G | T | C | A | C | T | C | T | 0 | 9 | 0.0019 | ESTs |
| G | C | G | G | G | T | C | G | C | C | 16 | 3 | 0.0020 | No match |
| G | G | G | A | C | C | T | A | G | G | 23 | 7 | 0.0023 | Neuron-specific gene family member 2 |
| G | T | C | T | G | G | G | G | G | G | 2 | 14 | 0.0024 | Monoglyceride lipase |
| G | C | T | A | T | G | A | G | A | A | 26 | 9 | 0.0024 | Amyloid β (A4) precursor-like protein 1 |
| C | C | C | A | G | A | T | A | T | T | 19 | 5 | 0.0028 | Tubulin, β-4 |
| G | T | G | G | C | A | G | G | C | G | 11 | 1 | 0.0029 | No match |
| G | T | G | T | G | C | C | C | C | C | 11 | 1 | 0.0029 | ESTs, highly similar to HYPOTHETICAL 67.8-kD PROTEIN in GND1-ERG9 INTERGENIC REGIONS (Saccharomyces cerevisiae) |
| G | C | T | T | T | T | G | G | G | A | 13 | 2 | 0.0034 | No match |
| T | G | T | A | G | T | G | T | A | A | 8 | 0 | 0.0035 | Ribosomal protein S8 |
| C | C | G | C | C | T | G | T | G | G | 14 | 34 | 0.0036 | Synapsin I |
| T | C | C | C | C | G | T | G | C | A | 2 | 13 | 0.0039 | No match |
| T | C | T | G | G | T | C | C | G | G | 1 | 11 | 0.0041 | Flotillin 2 |
| G | C | A | G | A | G | T | G | C | G | 32 | 14 | 0.0044 | Multiple matches |
| C | C | G | C | C | G | T | G | G | G | 0 | 8 | 0.0044 | Microtubule-associated protein 7 |
| G | T | T | G | T | G | A | T | T | T | 0 | 8 | 0.0044 | Ewing sarcoma homolog |
| T | G | A | G | C | A | C | T | C | C | 0 | 8 | 0.0044 | Follistatin-like |
| C | C | T | T | A | C | C | G | C | T | 30 | 56 | 0.0046 | ESTs |
| T | C | C | G | T | G | G | T | T | G | 28 | 53 | 0.0049 | ESTs, moderately similar to BIOTIN CARBOXYLASE (Anabaena pcc7120) |
| T | T | C | T | G | G | C | C | T | G | 10 | 27 | 0.0050 | ESTs, highly similar to EST00098 protein (Homo sapiens) |
| G | A | G | A | G | A | A | G | A | G | 10 | 1 | 0.0051 | Microtubule-associated protein τ |
| G | G | G | C | A | G | G | G | A | G | 10 | 1 | 0.0051 | ESTs |
| G | T | T | T | G | C | T | G | T | G | 16 | 4 | 0.0053 | Cathepsin B |
| G | C | G | G | G | T | T | C | G | C | 12 | 2 | 0.0062 | No match |
| T | G | G | T | G | C | A | C | G | T | 12 | 2 | 0.0062 | ESTs, weakly similar to similar to kinensin-like protein (Caenorhabditis elegans) |
| A | T | G | A | A | T | T | T | T | G | 1 | 10 | 0.0065 | ESTs, highly similar to CELL DIVISION CONTROL PROTEIN 4 (S. cerevisiae) |
| C | C | A | T | T | G | A | T | C | A | 1 | 10 | 0.0065 | ESTs, highly similar to bithoraxoid-like protein (R. norvegicus) |
| C | G | G | A | T | A | A | C | C | A | 1 | 10 | 0.0065 | Proliferation-associated protein 1 |
| G | C | T | T | G | T | G | A | C | G | 1 | 10 | 0.0065 | Transaldolase 1 |
| T | T | A | C | A | G | C | A | G | A | 1 | 10 | 0.0065 | ESTs, weakly similar to ORF YGL231c (S. cerevisiae) |
| T | G | C | A | G | T | C | C | C | C | 2 | 12 | 0.0065 | No match |
| C | C | C | C | A | G | C | C | A | G | 25 | 48 | 0.0065 | Ribosomal protein S3 |
| A | T | T | G | C | T | T | A | G | A | 7 | 0 | 0.0070 | RNA-binding motif protein 3 |
| C | A | G | T | A | A | C | T | T | C | 7 | 0 | 0.0070 | Aquaporin 4 |
| C | C | C | C | G | C | C | G | C | G | 7 | 0 | 0.0070 | Zinc finger protein, multitype 1 |
| C | C | C | C | T | C | C | C | C | A | 7 | 0 | 0.0070 | No match |
| G | G | C | C | T | T | T | G | T | G | 7 | 0 | 0.0070 | ESTs, weakly similar to coded for by C. elegans cDNA CEESW58F |
| G | G | A | T | A | C | G | T | T | T | 17 | 5 | 0.0075 | ESTs |
| G | G | C | G | G | G | G | C | C | C | 17 | 5 | 0.0075 | ESTs, weakly similar to 230K bullous pemphigoid antigen BPM1 (Mus musculus) |
| A | A | T | C | A | C | T | G | G | C | 0 | 7 | 0.0082 | ESTs, moderately similar to protein DS 1, 24K (H. sapiens) |
| C | G | A | C | C | C | C | G | G | G | 0 | 7 | 0.0082 | No match |
| C | T | A | A | C | C | T | C | C | A | 0 | 7 | 0.0082 | No match |
| G | T | G | T | T | G | T | C | G | G | 0 | 7 | 0.0082 | ESTs, weakly similar to S1-1 protein (R. norvegicus) |
| T | A | A | G | C | A | G | G | A | C | 0 | 7 | 0.0082 | No match |
| C | G | C | T | G | G | T | T | C | C | 35 | 60 | 0.0087 | Replication factor C, 140 kd |
| A | A | C | T | G | C | A | C | A | C | 13 | 3 | 0.0096 | ESTs, highly similar to SUCCINATE DEHYDROGENASE (H. sapiens) |
| G | G | G | T | C | C | T | G | C | T | 8 | 22 | 0.0097 | ESTs |
| C | G | C | G | G | C | A | G | G | C | 38 | 20 | 0.0104 | Dynactin 1 |
| C | A | G | G | A | C | T | C | C | G | 63 | 40 | 0.0106 | Stearoyl-Coenzyme A desaturase 2 |
| C | T | C | T | T | C | C | C | C | C | 42 | 23 | 0.0110 | Phosphatidylethanolamine-binding mRNA, complete cds |
| T | C | C | C | C | G | T | A | C | T | 4 | 15 | 0.0111 | No match |
| A | C | C | A | A | G | A | T | C | T | 3 | 13 | 0.0112 | Ribosomal protein S19 |
| A | T | G | G | G | T | C | A | T | C | 3 | 13 | 0.0112 | ESTs, highly similar to TRANSLOCATION PROTEIN SEC62 (S. cerevisiae) |
| T | C | T | G | C | C | C | T | C | C | 3 | 13 | 0.0112 | No match |
| G | A | T | T | C | C | G | T | G | A | 39 | 64 | 0.0113 | ESTs, highly similar to 60S RIBOSOMAL PROTEIN L37 (H. sapiens; R. norvegicus) |
| G | C | C | A | A | A | A | A | A | A | 1 | 9 | 0.0113 | ESTs, highly similar to 2-OXOGLUTARATE DEHYDROGENASE E1 COMPONENT PRECURSOR (H. sapiens) |
| G | G | C | T | T | T | G | G | A | G | 1 | 9 | 0.0113 | ESTs, moderately similar to HSPC005 (H. sapiens) |
| A | C | T | C | G | G | A | G | C | C | 23 | 43 | 0.0114 | Calmodulin |
| C | A | A | A | C | T | G | A | A | G | 2 | 11 | 0.0114 | ESTs, highly similar to spliceosomal protein SAP 155 (H. sapiens) |
| C | A | C | T | A | C | A | C | G | G | 2 | 11 | 0.0114 | FK506-binding protein 2 (13 kD) |
| G | G | G | G | C | T | C | A | G | C | 31 | 15 | 0.0115 | Glucose phosphate isomerase 1 complex |
| G | T | A | C | T | G | A | C | A | T | 9 | 23 | 0.0116 | No match |
| G | C | A | G | C | A | T | C | T | G | 16 | 5 | 0.0118 | ESTs |
| C | T | G | G | C | A | G | A | A | G | 11 | 2 | 0.0125 | ESTs, highly similar to NIFU PROTEIN [Anabaena pcc7120] |
| T | C | T | G | G | A | G | A | C | A | 11 | 2 | 0.015 | No match |
| A | G | A | G | C | T | G | T | G | G | 14 | 4 | 0.0132 | NADH dehydrogenase flavoprotein 1 |
| G | T | G | T | G | T | G | G | T | G | 19 | 7 | 0.0134 | ESTs |
| T | G | A | G | A | A | C | T | G | C | 19 | 7 | 0.0134 | Tetratricopeptide repeat domain |
| T | C | A | G | G | C | T | G | C | C | 153 | 199 | 0.0135 | Ferritin heavy chain |
| G | T | G | T | G | C | C | G | C | T | 17 | 6 | 0.0144 | No match |
| A | A | G | C | T | C | A | G | T | T | 5 | 16 | 0.0146 | ESTs |
| C | C | A | C | A | G | A | G | C | T | 5 | 16 | 0.0146 | Ena-vasodilator stimulated phosphoprotein |
| A | A | A | G | T | T | C | G | G | A | 6 | 0 | 0.0147 | sid23p |
| A | T | G | C | A | A | C | T | A | C | 13 | 27 | 0.0211 | ESTs, highly similar to CYTOCHROME C OXIDASE POLYPEPTIDE VIB (Bos taurus) |
| T | G | G | G | G | T | T | T | C | C | 44 | 27 | 0.0214 | Multiple matches |
| G | G | G | A | G | C | G | G | G | C | 22 | 10 | 0.0217 | ESTs, Highly similar to HYPOTHETICAL 109.5 kD PROTEIN IN PPA1-DAP2 INTERGENIC REGION (S. cerevisiae) |
| T | A | A | C | A | G | T | T | G | T | 13 | 4 | 0.0219 | Calnexin |
| A | G | A | G | A | G | G | C | C | A | 1 | 8 | 0.0226 | ESTs, weakly similar to PROFLIN I (M. musculus) |
| A | G | G | C | A | T | T | G | T | C | 1 | 8 | 0.0226 | ESTs |
| C | A | T | C | A | G | C | C | T | C | 1 | 8 | 0.0226 | Multiple matches |
| C | C | C | A | G | G | C | T | T | G | 1 | 8 | 0.0226 | ESTs |
| G | A | C | T | C | T | T | T | C | T | 1 | 8 | 0.0226 | ESTs |
| G | G | C | C | T | C | T | A | A | A | 1 | 8 | 0.0226 | ESTs |
| T | G | C | T | G | G | T | G | C | G | 1 | 8 | 0.0226 | ESTs |
| G | G | C | A | G | T | C | C | C | C | 5 | 15 | 0.0228 | ESTS |
| T | T | G | G | C | T | C | A | C | A | 5 | 15 | 0.0228 | ESTs |
| G | A | A | T | T | T | T | T | A | C | 16 | 6 | 0.0253 | No match |
| G | G | G | C | A | A | G | C | C | A | 17 | 7 | 0.0268 | Estrogen related receptor, α |
| T | G | G | C | T | T | T | T | C | T | 28 | 15 | 0.0277 | Multiple matches |
| A | T | C | C | T | A | G | G | T | C | 11 | 3 | 0.0277 | No match |
| C | A | G | A | C | G | G | A | A | G | 11 | 3 | 0.0277 | ESTs |
| G | G | G | A | A | A | A | C | T | T | 11 | 3 | 0.0277 | No match |
| G | T | C | G | G | C | C | G | C | C | 11 | 3 | 0.0277 | M. musculus DNase1 precursor mRNA, complete cds |
| G | G | G | A | T | G | G | C | C | A | 8 | 19 | 0.0287 | ESTs |
| A | A | T | A | T | G | T | G | T | G | 6 | 16 | 0.0298 | Cytochrome c oxidase, subunit Vlc |
| A | A | C | G | C | T | G | C | C | A | 25 | 42 | 0.0299 | Macrophage migration inhibitory factor |
| A | A | C | G | G | C | T | A | A | C | 5 | 0 | 0.0302 | No match |
| A | A | C | T | A | T | T | A | A | A | 5 | 0 | 0.0302 | ESTs |
| A | A | G | A | G | A | A | C | C | C | 5 | 0 | 0.0302 | No match |
| A | A | G | C | A | C | T | G | T | G | 5 | 0 | 0.0302 | ESTs |
| A | A | G | T | T | G | C | A | T | T | 5 | 0 | 0.0302 | NUCLEOSOME ASSEMBLY PROTEIN 1-LIKE 1 |
| A | C | C | T | T | G | C | C | C | T | 5 | 0 | 0.0302 | ESTs, highly similar to TRANSLOCON-ASSOCIATED PROTEIN, β SUBUNIT PRECURSOR (H. sapiens) |
| A | C | T | C | C | C | C | A | G | A | 5 | 0 | 0.0302 | No match |
| C | A | A | A | T | C | C | T | G | T | 5 | 0 | 0.0302 | No match |
| C | C | A | A | C | A | A | C | T | G | 5 | 0 | 0.0302 | No match |
| C | C | C | A | G | G | C | T | G | A | 5 | 0 | 0.0302 | ESTS |
| C | C | C | T | T | G | A | G | T | C | 5 | 0 | 0.0302 | No match |
| C | C | T | T | T | C | A | A | A | A | 5 | 0 | 0.0302 | General transcription factor II I |
| C | C | T | T | T | C | A | A | A | C | 5 | 0 | 0.0302 | ESTs, highly similar to similar to nuclear domain 10 protein NDP52 (H. sapiens) |
| C | T | G | C | A | T | T | A | A | G | 5 | 0 | 0.0302 | ESTs, highly similar to enoyl-CoA hydratase (H. sapiens) |
| C | T | T | G | C | A | A | T | C | T | 5 | 0 | 0.0302 | ESTs, weakly similar to HORMONE SENSITIVE LIPASE (M. musculus) |
| C | T | T | T | G | G | G | G | G | C | 5 | 0 | 0.0302 | ESTs |
| C | T | T | T | T | C | A | G | C | A | 5 | 0 | 0.0302 | No match |
| G | A | A | A | G | G | T | C | A | G | 5 | 0 | 0.0302 | ESTs |
| G | A | A | C | A | G | G | A | C | C | 5 | 0 | 0.0302 | ESTs |
| G | A | C | A | A | A | A | A | A | A | 5 | 0 | 0.0302 | ESTs |
| G | A | T | A | A | T | G | C | A | C | 5 | 0 | 0.0302 | NADH dehydrogenase (ubiquinone) Fe-S protein 4 (18 kD) |
| G | C | A | C | A | C | A | C | C | C | 5 | 0 | 0.0302 | EST |
| G | C | C | T | G | T | C | T | T | C | 5 | 0 | 0.0302 | ESTs |
| G | G | A | A | T | T | T | T | T | A | 5 | 0 | 0.0302 | ESTs |
| G | G | G | G | C | T | A | T | C | G | 5 | 0 | 0.0302 | No match |
| G | G | G | G | G | C | G | C | G | C | 5 | 0 | 0.0302 | No match |
| G | T | G | T | A | G | A | C | C | A | 5 | 0 | 0.0302 | ESTS |
| T | A | G | T | G | T | T | T | T | C | 5 | 0 | 0.0302 | No match |
| T | C | A | A | A | C | T | G | C | C | 5 | 0 | 0.0302 | No match |
| T | C | A | T | C | T | T | T | A | A | 5 | 0 | 0.0302 | Calreticulin |
| T | C | C | T | C | A | C | G | T | G | 5 | 0 | 0.0302 | Pyruvate dehydrogenase 2 |
| T | C | T | T | T | A | A | T | C | C | 5 | 0 | 0.0302 | ESTs |
| A | A | G | C | C | A | C | A | G | A | 6 | 0 | 0.0147 | ESTs, moderately similar to PUTATIVE SURFACE GLYCOPROTEIN C21ORF1 PRECURSOR (H. sapiens) |
| A | G | C | A | G | C | C | C | C | T | 6 | 0 | 0.0147 | No match |
| C | A | C | T | G | G | G | T | T | G | 6 | 0 | 0.0147 | ESTs, highly similar to unknown (H. sapiens) |
| C | G | G | A | C | G | G | C | T | T | 6 | 0 | 0.0147 | No match |
| G | G | G | A | T | T | C | C | A | G | 6 | 0 | 0.0147 | No match |
| G | G | T | T | C | T | G | C | C | C | 6 | 0 | 0.0147 | ESTs |
| T | A | G | T | G | G | C | G | T | A | 6 | 0 | 0.0147 | α-internexin neuronal intermediate filament protein |
| T | G | A | G | C | C | T | G | G | T | 6 | 0 | 0.0147 | Latent transforming growth factor β binding protein 3 |
| T | G | G | A | G | A | A | C | T | A | 6 | 0 | 0.0147 | ESTS |
| T | G | G | C | C | A | A | G | C | C | 6 | 0 | 0.0147 | Polyhomeotic (mPh2) mRNA |
| T | G | T | T | C | T | T | C | C | C | 6 | 0 | 0.0147 | No match |
| T | T | T | G | T | G | A | C | T | G | 6 | 0 | 0.0147 | C-terminal–binding protein 1 |
| G | C | C | T | T | T | A | T | G | A | 12 | 27 | 0.0155 | Ribosomal protein S24 |
| T | C | C | G | G | G | C | G | A | G | 12 | 3 | 0.0163 | Replication-dependent histone H2A.1 gene |
| G | A | A | C | T | T | G | C | A | A | 18 | 7 | 0.0175 | ESTs, moderately similar to FARNESYL PYROPHOSPHATE SYNTHETASE (R. norvegicus) |
| C | G | T | C | T | G | T | G | A | A | 10 | 2 | 0.0175 | No match |
| G | G | C | C | C | C | A | A | A | C | 10 | 2 | 0.0175 | V-crk-associated tyrosine kinase substrate |
| A | A | C | G | T | T | G | G | A | A | 0 | 6 | 0.0183 | ESTs, weakly similar to cytosolic inorganic pyrophosphatase (H. sapiens) |
| A | A | C | T | T | G | G | C | T | G | 0 | 6 | 0.0183 | Guanylate kinase membrane-associated inverted 1 |
| A | A | G | C | T | G | C | C | C | T | 0 | 6 | 0.0183 | ORNITHINE AMINOTRANSFERASE PRECURSOR |
| A | G | C | C | C | A | T | C | A | A | 0 | 6 | 0.0183 | ESTs |
| A | G | G | A | G | G | G | G | T | A | 0 | 6 | 0.0183 | RAB24, member RAS oncogene family |
| A | T | T | C | T | G | G | C | A | G | 0 | 6 | 0.0183 | ESTs, highly similar to UBIQUITIN-CONJUGATING ENZYME E2-17 KD 3 (H. sapiens; R. norvegicus) |
| C | C | G | A | A | T | T | A | C | C | 0 | 6 | 0.0183 | Cornichon homolog (Drosophila) |
| C | C | T | G | T | A | A | T | C | C | 0 | 6 | 0.0183 | ESTs |
| C | G | G | C | C | T | A | C | G | T | 0 | 6 | 0.0183 | Superoxide dismutase 2, mitochondrial |
| G | G | C | A | G | A | C | T | G | T | 0 | 6 | 0.0183 | EST |
| G | G | G | A | T | C | C | A | G | G | 0 | 6 | 0.0183 | ESTs, weakly similar to coded for by C. elegans cDNA yk157f8.5 |
| G | G | T | A | A | A | G | T | T | A | 0 | 6 | 0.0183 | ESTs, weakly similar to MITOCHONDRIAL ELONGATION FACTOR TS PRECURSOR (H. sapiens) |
| G | T | C | C | T | T | T | T | T | C | 0 | 6 | 0.0183 | ESTs, highly similar to ring-box protein 1 (M. musculus) |
| G | T | G | G | G | G | C | G | G | G | 0 | 6 | 0.0183 | ESTs |
| T | A | A | C | A | A | A | G | G | A | 0 | 6 | 0.0183 | ESTS |
| T | A | C | C | C | C | G | T | A | C | 0 | 6 | 0.0183 | No match |
| T | C | C | C | C | G | T | A | T | A | 0 | 6 | 0.0183 | No match |
| T | C | T | G | G | C | A | A | A | G | 0 | 6 | 0.0183 | EST |
| G | C | A | C | C | G | A | A | C | A | 28 | 14 | 0.0190 | sid23p |
| G | A | A | G | A | T | G | A | G | C | 36 | 20 | 0.0192 | RAB3A, member RAS oncogene family |
| C | A | A | A | A | A | T | A | A | A | 25 | 12 | 0.0197 | ESTs |
| G | A | G | A | T | G | C | C | T | G | 10 | 23 | 0.0205 | ESTs, highly similar to NADH-UBIQUINONE OXIDOREDUCTASE 42 kD SUBUNIT PRECURSOR (B. taurus) |
| A | C | G | T | C | G | T | G | C | G | 8 | 1 | 0.0206 | No match |
| C | C | T | T | T | C | T | G | T | C | 8 | 1 | 0.0206 | No match |
| C | T | T | T | G | G | G | G | A | C | 8 | 1 | 0.0206 | ESTS, Highly similar to Down syndrome candidate region 1 (H. sapiens) |
| G | C | A | G | G | C | T | T | C | G | 8 | 1 | 0.0206 | ESTs, weakly similar to HYPOTHETICAL 54.9 kD PROTEIN C02F5.7 IN CHROMOSOME III (C. elegans) |
| G | C | C | T | G | C | C | C | C | G | 8 | 1 | 0.02060 | cdc37 homolog |
| G | G | G | C | C | C | C | G | G | G | 8 | 1 | 0.0206 | Multiple matches |
| A | A | G | A | G | A | A | C | A | C | 2 | 10 | 0.0208 | No match |
| G | G | A | G | A | A | G | A | G | C | 2 | 10 | 0.0208 | No match |
| T | A | C | G | G | C | T | A | A | A | 2 | 10 | 0.0208 | No match |
| A | G | A | A | A | A | A | A | A | A | 3 | 12 | 0.0209 | Multiple matches |
| G | A | G | T | G | C | C | T | G | T | 3 | 12 | 0.0209 | ESTs |
| T | G | A | C | A | G | C | T | T | G | 5 | 0 | 0.0302 | ESTs |
| T | G | A | G | C | C | A | A | C | T | 5 | 0 | 0.0302 | ESTs |
| T | G | A | G | T | T | A | C | A | G | 5 | 0 | 0.0302 | Nucleosome assembly protein 1-like 2 |
| T | G | T | G | A | G | G | C | T | C | 5 | 0 | 0.0302 | No match |
| T | T | C | A | G | C | T | C | G | A | 33 | 19 | 0.0303 | Ribosomal protein S7 |
| C | C | G | C | C | A | A | G | G | G | 9 | 2 | 0.0320 | ESTs, moderately similar to hTOM34p (H. sapiens) |
| G | C | A | G | G | T | C | C | C | C | 9 | 2 | 0.0320 | ESTs |
| G | G | G | C | C | C | A | A | C | T | 9 | 2 | 0.0320 | EST |
| G | G | G | G | A | G | A | C | G | C | 9 | 2 | 0.0320 | Fibroblast growth factor receptor 1 |
| T | G | C | A | G | T | G | C | A | C | 9 | 2 | 0.0320 | ESTs |
| C | T | G | C | G | A | G | A | T | T | 25 | 13 | 0.0322 | ESTs, highly similary to NADH-UBIQUINONE DEHYDROGENASE 24-kD SUBUNIT PRECURSOR (R. norvegicus) |
| A | G | A | A | C | T | T | C | A | A | 7 | 1 | 0.0327 | No match |
| C | A | G | G | G | C | G | A | G | A | 7 | 1 | 0.0327 | ESTs, highly similar to hypothetical protein (H sapiens) |
| C | T | G | G | G | C | T | T | G | A | 7 | 1 | 0.0327 | No match |
| G | C | A | A | G | A | G | A | G | A | 7 | 1 | 0.0327 | Glutamine synthetase |
| G | C | C | C | T | G | G | C | C | C | 7 | 1 | 0.0327 | No match |
| G | G | A | T | C | C | C | C | A | A | 7 | 1 | 0.0327 | ESTs |
| T | C | C | A | A | C | T | C | C | T | 7 | 1 | 0.0327 | ESTs, weakly similar to weak similarity to Bascillus stearothemophilus. 30S ribosomal protein S21 (C. elegans) |
| T | G | A | A | C | C | C | A | T | T | 7 | 1 | 0.0327 | Cytochrome oxidase, subunit VIa, polypeptide 1 |
| T | G | G | A | G | G | A | G | C | T | 7 | 1 | 0.0327 | ESTs, highly similar to formin-binding protein 11 (M. musculus) |
| G | A | G | A | C | C | A | T | C | G | 3 | 11 | 0.0333 | ESTs, highly similar to (define not available 6013323< M. musculus) |
| G | C | G | A | G | G | A | A | G | A | 3 | 11 | 0.0333 | No match |
| G | G | G | G | A | A | A | T | C | G | 80 | 59 | 0.0341 | ESTs, Moderately similar to THYMOSIN β-10 (H. sapiens; R. norvegicus; Equus caballus) |
| C | C | A | G | G | C | C | G | G | G | 15 | 6 | 0.0347 | Protein kinase C, ζ |
| G | A | G | C | C | C | C | T | T | G | 15 | 6 | 0.0347 | No match |
| T | G | G | A | A | T | G | C | A | G | 15 | 6 | 0.0347 | Calnexin |
| A | G | T | T | G | G | A | A | A | C | 12 | 4 | 0.0356 | Nuclear factor of activated T-cells, cytoplasmic 2 |
| C | C | C | G | T | A | G | C | C | C | 12 | 4 | 0.0356 | Tropomyosin 2, β |
| G | C | G | C | C | C | T | G | A | T | 12 | 4 | 0.0356 | No match |
| G | G | C | A | C | C | A | T | C | T | 12 | 4 | 0.0356 | No match |
| T | A | C | C | C | C | A | G | G | G | 12 | 4 | 0.0356 | No match |
| T | T | G | A | T | C | C | C | C | A | 12 | 4 | 0.0356 | Lysosomal membrane glycoprotein 1 |
| G | G | G | G | C | A | G | C | C | C | 36 | 22 | 0.0357 | CornichonDrosophila-like |
| G | C | A | C | A | A | C | T | T | G | 213 | 181 | 0.0361 | Multiple matches |
| C | T | A | C | T | G | A | C | A | T | 2 | 9 | 0.0364 | No match |
| G | C | G | A | G | G | G | A | G | C | 2 | 9 | 0.0364 | Dim1 (S. pombe) |
| G | G | A | G | C | G | C | T | A | T | 2 | 9 | 0.0364 | ESTs |
| A | A | A | C | A | T | T | G | G | G | 0 | 5 | 0.0366 | ESTs, weakly similar to Similar to S. cerevisiae EMP70 protein precursor (H. sapiens) |
| A | C | A | A | C | A | A | A | A | T | 0 | 5 | 0.0366 | ESTs |
| A | C | C | C | G | C | A | C | C | C | 0 | 5 | 0.0366 | No match |
| A | C | T | C | T | T | T | C | C | T | 0 | 5 | 0.0366 | ESTs |
| A | C | T | G | T | G | T | C | T | T | 0 | 5 | 0.0366 | ESTs |
| A | G | A | G | G | C | A | C | T | T | 0 | 5 | 0.0366 | ESTs, highly similar to ACETYL-COENZYME A SYNTHETASE (Escherichia coli) |
| A | G | A | T | G | G | C | T | T | T | 0 | 5 | 0.0366 | Mast cell-growth factor |
| A | G | C | C | G | T | G | T | A | T | 0 | 5 | 0.0366 | ESTs |
| A | G | G | C | T | G | G | T | G | A | 0 | 5 | 0.0366 | Proteasome (prosome, macropain) subunit, β type 1 |
| C | A | A | A | T | G | G | A | C | T | 0 | 5 | 0.0366 | ESTs |
| C | A | C | A | G | C | G | T | T | G | 0 | 5 | 0.0366 | No match |
| C | A | C | T | T | T | T | T | T | T | 0 | 5 | 0.0366 | No match |
| C | C | A | A | G | G | C | T | G | C | 0 | 5 | 0.0366 | ESTs |
| C | G | G | G | A | C | C | C | C | A | 0 | 5 | 0.0366 | No match |
| C | T | A | G | T | C | G | C | A | A | 0 | 5 | 0.0366 | ESTs, highly similar to THYMIDINE PHOSPHORYLASE (H. sapiens) |
| C | T | G | T | G | T | A | A | T | T | 0 | 5 | 0.0366 | ESTs |
| G | A | A | A | C | C | A | G | G | A | 0 | 5 | 0.0366 | ESTS, weakly similar to PLATELET-ENDOTHELIAL TETRASPAN ANTIGEN 3 (M. musculus) |
| G | A | A | T | T | G | A | T | G | A | 0 | 5 | 0.0366 | Secretogranin II |
| G | A | T | C | T | G | A | C | C | C | 0 | 5 | 0.0366 | ESTs |
| G | C | C | A | C | G | C | C | C | T | 0 | 5 | 0.0366 | No match |
| G | C | T | T | A | A | A | A | A | T | 0 | 5 | 0.0366 | ESTS |
| G | G | A | A | G | T | T | G | G | C | 0 | 5 | 0.0366 | No match |
| G | G | G | A | A | G | A | G | A | T | 0 | 5 | 0.0366 | ESTs |
| G | G | T | A | C | C | C | C | C | A | 0 | 5 | 0.0366 | ESTs |
| G | T | T | T | T | C | T | A | G | T | 0 | 5 | 0.0366 | ESTs, highly similar to PRE-mRNA SPLICING HELICASE BRR2 (S. cerevisiae) |
| T | A | G | A | C | C | A | G | G | C | 0 | 5 | 0.0366 | ESTs, weakly similar to VITAMIN K-DEPENDENT γ-CARBOXYLASE (H. sapiens) |
| T | A | T | G | T | C | A | A | G | T | 0 | 5 | 0.0366 | No match |
| T | C | C | A | G | A | A | A | A | T | 0 | 5 | 0.0366 | No match |
| T | C | C | C | C | G | T | T | C | A | 0 | 5 | 0.0366 | No match |
| T | G | A | A | C | T | G | T | G | T | 0 | 5 | 0.0366 | ESTs |
| T | G | G | A | T | G | C | T | G | G | 0 | 5 | 0.0366 | Adenomatosis polyposis coli binding protein Eb1 |
| T | G | G | G | C | C | A | C | A | C | 0 | 5 | 0.0366 | ESTs, weakly similar to KIAA0990 protein (H. sapiens) |
| T | T | C | C | C | C | A | C | G | T | 0 | 5 | 0.0366 | Cell division cycle 2 homolog S. pombe-like 2 |
| C | A | A | T | A | A | A | C | T | G | 23 | 12 | 0.0367 | Suppressor of initiator codon mutations-yeast homolog-related sequence 1 |
| G | G | C | T | G | G | G | G | G | C | 26 | 14 | 0.0369 | Profilin 1 |
| A | C | C | G | G | T | A | T | T | T | 5 | 14 | 0.0376 | Protein kinase C, β |
| C | C | A | A | T | G | C | A | G | C | 5 | 14 | 0.0376 | ESTs, highly similar to PROBABLE 3-OXOADIPATE COA-TRANSFERASE SUBUNIT B (Bacillus subtilis) |
| A | A | A | G | T | G | T | T | T | C | 1 | 7 | 0.0379 | ESTs |
| A | T | C | T | C | A | A | A | C | C | 1 | 7 | 0.0379 | ESTs |
| C | C | T | A | C | A | G | T | C | C | 1 | 7 | 0.0379 | No match |
| C | G | C | A | A | T | T | C | A | A | 1 | 7 | 0.0379 | No match |
| G | A | G | A | A | A | G | T | T | C | 1 | 7 | 0.0379 | ESTs |
| G | G | A | T | G | A | T | G | G | T | 1 | 7 | 0.0379 | ESTs, highly similar to EXTRACELLULAR RIBONUCLEASE LE PRECURSOR (Lycopersicon esculentum) |
| G | T | C | A | G | G | G | G | G | A | 1 | 7 | 0.0379 | ESTs |
| T | C | C | C | C | G | T | C | C | A | 1 | 7 | 0.0379 | No match |
| T | C | C | C | T | A | C | T | A | A | 1 | 7 | 0.0379 | No match |
| T | G | A | G | C | A | G | T | G | G | 1 | 7 | 0.0379 | No match |
| T | G | T | G | T | T | C | C | C | A | 1 | 7 | 0.0379 | ESTs, weakly similar to (define not available 5931573, M. musculus |
| G | G | A | T | T | T | G | G | C | T | 45 | 66 | 0.0388 | Keratin complex 2, basic, gene1 |
| A | T | G | A | A | A | C | T | T | T | 19 | 9 | 0.0393 | ESTs |
| T | C | A | G | A | G | G | C | C | T | 22 | 37 | 0.0396 | ESTs |
| A | A | C | A | A | A | G | C | A | A | 10 | 3 | 0.0402 | ESTs, moderately similar to unknown (H. sapiens) |
| A | G | G | C | C | A | G | C | T | G | 10 | 3 | 0.0402 | Sema domain, immunoglobulin domain (lg), short basic domain, secreted, (semaphorin) 3F |
| G | C | C | A | A | A | T | T | T | G | 10 | 3 | 0.0402 | ESTs, highly similar to 26S proteasome subunit p112 (R. norvegicus) |
| G | G | G | C | T | G | G | A | A | T | 10 | 3 | 0.0402 | ESTs |
| C | T | T | G | C | A | A | G | T | G | 13 | 25 | 0.0417 | ESTs, highly similar to NADH-UBIQUINONE OXIDOREDUCTASE B22 SUBUNIT (B. taurus) |
| G | A | G | T | T | C | T | C | T | G | 13 | 25 | 0.0417 | ESTs, moderately similar to HSPC035 protein (H. sapiens) |
| G | C | T | G | G | C | A | G | C | C | 32 | 19 | 0.0417 | RAD9 homolog (S. pombe) |
| T | T | G | G | C | T | G | C | C | C | 43 | 28 | 0.0422 | Ribosomal protein S14 |
| G | T | C | T | G | C | T | G | A | T | 6 | 15 | 0.0439 | Guanine nucleotide-binding protein, β-2, related sequence 1 |
| G | A | G | G | A | G | T | G | G | G | 9 | 19 | 0.0461 | NO match |
| C | T | T | C | T | C | A | T | T | T | 3 | 10 | 0.0462 | Membrane transporter protein |
| G | G | C | A | A | T | T | C | A | A | 3 | 10 | 0.0462 | No match |
| T | G | T | C | G | C | C | A | G | G | 3 | 10 | 0.0462 | No match |
| C | C | A | G | A | A | C | A | G | A | 14 | 26 | 0.0464 | Ribosomal protein L30 |
| G | C | C | T | G | T | G | G | T | G | 21 | 11 | 0.0469 | Lymphocyte antigen 6 complex, locus H |
| G | G | G | T | G | C | A | G | C | C | 25 | 14 | 0.0470 | FK506-binding protein 8 (38 kD) |
| G | T | G | C | C | C | T | C | C | A | 34 | 21 | 0.047 | No match |
| T | G | G | A | A | C | C | T | T | G | 13 | 5 | 0.0478 | ESTs |
| T | T | C | T | C | C | T | C | A | G | 13 | 5 | 0.0478 | ESTs, moderately similar to (define not available 5815343, M. musculus) |
| T | A | T | G | C | A | A | C | C | C | 33 | 21 | 0.0486 | Necdin |
| A | A | A | A | C | A | G | T | G | G | 15 | 27 | 0.0489 | Ribosomal protein L37a |
| G | G | G | A | G | G | G | A | G | G | 17 | 8 | 0.0499 | No match |
| A | G | C | A | G | T | C | C | C | T | 11 | 4 | 0.0542 | Homogentisate 1,2-dioxygenase |
| C | T | C | A | G | A | A | A | G | C | 11 | 4 | 0.0502 | ATPase, H+ transporting, lysosomal (vacuolar proton pump), α 70 kD, isoform 2 |
| G | C | T | G | C | C | T | T | C | C | 11 | 4 | 0.0502 | Harvey rat sarcoma virus oncogene |
| T | G | A | A | C | C | T | G | A | G | 11 | 4 | 0.0502 | ESTs |
| C | T | C | C | T | G | C | A | G | C | 5 | 13 | 0.0508 | sid478p |
| G | A | C | G | A | G | A | T | T | C | 5 | 13 | 0.058 | ESTs, weakly similar to Lpe5p (S. cerevisiae) |
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For each tag (tag sequence) the number of its copies in Ts65Dn library (Ts65Dn) and normal library (Normal) together with the estimated p-chance and GenBank matach (GenBank match) are shown. Complete table available as online supplementary material atwww.genome.org. An ongoing update of the table is available atmedger.unige.ch/research/projects.html.
