BodyMap: A Collection of 3′ ESTs for Analysis of Human Gene Expression Information

Table 3.

Known Genes Selected as Uniquely Expressed in Myeloid Cells

Cluster ID GenBank identity #ACC Pvalue
GS08362 Granulocyte colony-stimulating factor receptor S71484 2.56E-17
GS00697 Plasminogen activator inhibitor-2 (PAI-2) M24657 1.13E-09
GS01724 Pleckstrin (P47) X07743 1.13E-09
GS01024 Leukocyte adhesion protein/CD18 M15395 2.14E-08
GS01345 Bactericidal permeability increasing protein (BPI) J04739 7.56E-06
GS08325 Phosphatidylinositol 3-kinase p110delta U86453 7.56E-06
GS01990 Secreted protein (I-309) M57502 7.56E-06
GS01200 ICB-1 mRNA AF044896 1.42E-04
GS01719 Myeloid cell nuclear differentiation antigen M81750 1.42E-04
GS01202 Neutrophil oxidase factor (NCF2)/p67-phox U00788 1.42E-04
GS00779 Wegener's granulomatosis autoantigen proteinase 3 M97911 1.42E-04
GS01687 c-raf-1 proto-oncogene L00212 2.68E-03
GS01000 EVI2B3P M60830 2.68E-03
GS08337 Grancalcin (neutrophil monocyte Ca binder) M81637 2.68E-03
GS00610 Beige protein homolog (chs) U67615 2.68E-03
GS01164 Differentiation antigen (CD33) M23197 2.68E-03
GS08512 Monocytic leukemia zinc finger protein U47742 2.68E-03
GS01229 Migration inhibitory factor-related protein 8 M21005 2.68E-03
GS01963 Type II interleukin-1 receptor antagonist (IL-1ra3) AF057168 2.68E-03
  • Gene signature (GS) clusters were selected by the criteria that have probability of uncontrolled expression between myeloid cells (HL60, HL60/DMSO, HL60/TPA, granulocytes) and the remaining tissues less than 0.5%. P values represent the probabilities of each gene with uncontrolled expression between two sets of libraries (see Methods for calculations). Along with these known genes, 28 GSs for novel genes as follows were selected: GS01371, GS01572, GS08424, GS01582, GS01553, GS01965, GS01356, GS00656, GS08595, GS01922, GS08435, GS01123, GS00963, GS01383, GS08551, GS08572, GS01352, GS01109, GS01561, GS08460, GS05157, GS00549, GS01251, GS00627, GS08477, GS08379, GS01458, GS01987. For sequences, refer to http://bodymap.ims.u-tokyo.ac.jp.

This Article

  1. Genome Res. 10: 1817-1827

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