BodyMap: A Collection of 3′ ESTs for Analysis of Human Gene Expression Information

Table 1.

The Most Abundant Transcripts in Human Tissues

B01.hl60 857 C08.Aortic media 1002 N01. Retina 877 X01.hepG2 740
Ribosomal protein S8 X67247 24 Elastin M17282 155 Opsin K02281 14 EF-1α X16869 17
Ribosomal protein L9 U09953 22 Osteonectin J03040 27 Na/K ATPase β2 D87330 13 Albumin L00133 17
Ribosomal protein L23 X53777 17 Ribosomal protein L21 X89401 16 Aldolase C X07292 10 TPT-1 X16064 9
Ribosomal protein L7a X52138 16 GS13325 None 16 Ribosomal protein L9 U09953 9 Ribosomal protein L31 X69181 9
B02. hl60/DMSO 1081 C09. Ventricle muscle 3785 N02. Cortex 2242 X02. Neonate liver 739
β-actin X00351 14 Myosin heavy chain M25139 101 Myelin basic protein M13577 49 Albumin L00133 227
HHCPA78 homolog S73591 6 Ig-λ light chain D01059 75 hng/RC3 Y15059 14 Apolipoprotein B J02775 38
Ribosomal protein L3 M90054 5 Myoglobin X00373 60 Apolipoprotein J M74816 13 α2-HS-glycoprotein M16961 21
L-plastin L05492 5 Troponin C, skel/card M37984 53 Aldolase C X07292 9 Haptoglobin α 1S X00637 16
B03. hl60/TPA 889 C10. atrial muscle 2823 N03. cerebellum 1107 X03. fetal liver 641
EF-1α X16869 26 ANF M54951 203 GFAP S40719 22 Albumin L00133 109
Methionine AT-a L43509 14 Actin, a-cardiac J00073 88 Aldolase C X07292 7 Haptoglobin α 1S X00637 27
Ferritin L M11147 14 α B-crystallin S45630 27 Myelin basic protein M13577 5 γ-G globin X55656 17
TPT-1 X16064 13 Troponin T, cardiac X74819 25 Apolipoprotein J M74816 5 Apolipoprotein All X04898 14
B04. granulocyte 1164 C11. Skeletal muscle 4527 N04. Neuroblast 1235 X04. Adult liver 956
β-2-microglobulin M17987 25 α-actin, skeletal M20543 301 EF-1α X16869 19 Albumin L00133 279
Spermidine/spermineAT M77693 22 Myosin heavy chain X03741 173 H3.3 histone M11354 17 Haptoglobin α 1S X00637 41
HLA-Cw1 M26429 21 Myosin heavy chain X03740 137 ribosomal protein L9 U09953 16 α-1 acid gp M13692 20
Pre-B enhancing factor U02020 20 Troponin C, skeletal X07898 121 TPT-1 X16064 15 Apolipoprotein B J02775 19
B05. CD8 T cell 1104 C12. Hair follicle 2164 N05. Caudate nucl. 1077 X05. Lung 874
β-2-microglobulin M17987 16 Fibronectin K00799 84 hng/RC3 Y15059 12 Pulmonary SAP M30838 87
TPT-1 X16064 12 COL1A1 M32798 57 TALLA-1 D29808 11 Clara cells 10 kd prot. U01101 31
EF-1a X16869 10 EF-1α X16869 43 Myelin basic protein M13577 8 HLA-E heavy chain X64881 12
Yeast rp L4 homolog Z12962 10 Osteonectin J03040 30 KIAA0607 AB011179 7 Fibronectin K00799 10
B06. CD4 T cell 1028 E1. Keratinocyte 820 N06. Thalamus 912 X06. Colon mucosa 921
β-2-microglobulin M17987 19 Cytokeratin 14 J00124 15 Myelin basic protein M13577 36 L-FABP M10617 40
Ribosomal protein L11 X79234 14 Metallothionein V00594 10 GFAP S40719 8 Galectin-4 AF01483 18
TPT-1 X16064 13 Lipocortin II D00017 9 apo J M74816 7 CLCA1 AF03940 13
23 kD highly basic protein X56932 12 Ribosomal protein S19 M81757 8 Sox 8 AF164104 6 Ig-λ-light chain D01059 12
C01. Adipose tissue 1488 E02. Cornea 2793 N07. Putamen 871 X07. Small cell ca. lung 843
Gelatin BP AB012165 19 Apolipoprotein J M74816 73 Myelin basic protein M13577 8 BBC1 X64707 8
Ribosomal protein S8 X67247 16 Cytokeratin 12 D78367 55 GS04506 None 8 23 kD highly basic prot. X56932 7
apM2 D45370 15 apM2 NM006829 40 TPT-1 X16064 7 Ribosomal protein S11 X06617 7
TPT-1 X16064 14 Ferritin H M11146 31 Na/K ATPase β2 D87330 7 Ribosomal protein L7a X52138 6
C02. Aortic endothel* 967 E03. Conjunctiva 937 N08. Astrocyte* 1103 X08. Adeno ca. of lung 1183
Fibronectin K00799 36 β-2-microglobulin M17987 23 EF-1α X16869 26 COL3A1 X14420 20
TPT-1 X16064 14 Cytokeratin 13 X52426 23 Ribosomal protein S17 M13932 14 Thymosin β4 M17733 15
PAI-1 X13345 12 Lipocortin X05908 8 GFAP S40719 12 Ig-λ light chain D01059 14
CTGF X78947 12 EF-4All D30655 8 Thymosin β4 M17733 10 Ig-κ light chain M11937 13
C03. Osteoblast* 928 E04. Intest. Metaplasia 2192 N09. Schwann cell* 975 X09. Squamous cell ca. lung 1190
COL1A2 J03464 25 Calcyclin J02763 25 Ribosomal protein L10 AB007170 18 Calcyclin J02763 23
Fibronectin K00799 22 EF-1α X16869 20 Ribosomal protein L9 U09953 17 Ferritin L chain M11147 14
Osteonectin J03040 20 Aminopeptidase N M22324 17 Ribosomal protein S19 M81757 17 Cystatin B L03558 11
COL3A1 X14420 18 PSCA AF043489 17 Ribosomal protein S29 U14973 15 Cathepsin B L16510 9
C04. Fibroblast* 1097 E05. Fundic gland 3304 N10. Fetal neuron* 1108 X10. Iris 3314
Stromelysin X05232 26 Pepsinogen J00287 572 Ribosomal protein L37a X66699 9 Apolipoprotein D M16696 45
Fibronectin K00799 22 Lysozyme X14008 33 TPT-1 X16064 9 1-8D X57351 43
Collagenase X05231 15 Gastric lipase X05997 32 Ribosomal protein L5 U14966 8 Yeast rp L41 homolog Z12962 42
PAI-1 X13345 14 TPT-1 X16064 29 Thymosin β4 M17733 8 TPT-1 X16064 40
C05. Mesangium 1101 E06. Ileum epithel 3675 N11. Corpus callosum 949 X11. Skin full thickness 4604
Fibronectin K00799 48 β-2-microglobulin M17987 59 GFAP S40719 12 Yeast rp L41 homolog Z12962 59
Calcyclin J02763 30 CLCA1 AF039400 51 Ribosomal protein L37a X66699 7 GS20959 None 58
ribosomal protein S19 M81757 13 defensin 6 M98331 46 ribosomal protein S8 X67247 7 ribosomal protein S18 X69150 57
Yeast rp S28 homolog D14530 10 GS2706 None 34 Myelin basic protein M13577 7 Delta-6 desaturase AF03679 57
C06. Itoh cell 1283 E07. Colon epithel 6451 N12. Substantia nigra 3477 X12. Tumor infiltrates 1585
Osteonectin J03040 23 Galectin-4 AF014838 106 Myelin basic protein M13577 129 β-2-microglobulin M17987 49
Fibronectin K00799 18 cytokeratin 8 X12882 86 Ribosomal protein L7a X52138 51 LD78α D90144 31
PAI-1 X13345 16 L-FABP M10617 78 EF-1α X16869 48 RF-1α X16869 25
EF-1α X16869 16 Calcyclin J02763 75 αB-crystallin S45630 46 Yeast rp S28 homolog D14530 24
C07. Bone flakes 1042 E08. Pituitary 1015 N13. Fetal brain 3797
Osteonectin J03040 25 Prolactin M29386 181 α-Tubulin X01703 35
COL1A2 J03464 24 Growth hormone M13438 20 Ribosomal protein L37a X66699 21
β-Globin V00497 13 Secretogranin I Y00064 12 EF-1α X16869 20
COL3A1 X14420 12 sGTP-bp X07036 9 Stathmin J04991 16

  • The source tissue or cells and the number of total ESTs representing chromosomally encoded genes are given (shaded cells). The source groups were blood cells (B01–B06), connective and muscular tissues (C01–C12), epithelial tissues (E01–E08) and nervous tissues (N01–N13). When the source tissue was composed of multiple cell types or an uncategorizable cell type, it was categorized as complex (X01–X12). Asterisks denote primary cultured cells. The identities of the most frequently isolated tags are given along with their frequencies. (TPT-1) Translationally controlled tumor protein; (methionine AT-a) methionine adenosyltransferase-α; (spermine AT) spermine acetyltransferase; (EF-1a) elongation factor 1-α; (apM2) adipose most abundant protein-2; (PAI-1) plasminogen activator inhibitor-1; (ANF) atrial atriuretic factor; (EF-4AII) elongation factor 4AII; (CLCA1) calcium activated chloride channel 1; (L-FABP) liver fatty acid binding protein; (sGTP-BP) stimulatory GTP bonding protein; (hng/RC3) human neurogranin; (GFAP) glial fibrillary acidic protein; (TALLA-1) T-cell acute lymphoblastic leukemia associated antigen 1; (pulmonary SAP) pulmonary surfactant apoprotein.

This Article

  1. Genome Res. 10: 1817-1827

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