Table 2.
Markers and Interactive Operations
| Cutoff | Markers | Ctgs | F− | F+ | Chi | Qs | Order | Split | Merge |
| 1e-06 | No | 9 + 1 | 7 − 1 | 3 | 2 | 146 (2) | 45, 17, 0 | 2 | 5 |
| 1e-06 | Yes | 5 + 0 | 2 − 1 | 3 | 2 | 283 (2) | 116, 74, 0 | 2 | 1 |
| 1e-07 | No | 16 + 1 | 13 − 2 | 0 | 0 | 0 (0) | 16, 1, 0 | 0 | 10 |
| 1e-07 | Yes | 7 + 0 | 2 − 1 | 0 | 0 | 0 (0) | 19, 3, 0 | 0 | 1 |
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(Ctgs) contigs; (F−) false-negative; (F+) false-positive; (Qs) questionable.
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The data set has perfect data, 15× random coverage, 2098 clones with lengths between 145 and 185 kb, and a marker every 20 kb and uses a tolerance of 7.
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↵The CpM table uses the (marker, cutoff) pairs of (1 1e–05) (2 1e–04) (3 1e–03).
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↵The +n is the number of singletons.
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↵The −n indicates the number of bridging clones, i.e., clones that cover F− overlaps and prevent breaks.
