Table 1.
Rates and Sizes with Perfect Overlap
| Type | Tol | Cutoff | Ctgs | F− | F+ | Chi | Qs | Order |
| Rates | 0 | 1e-08 | 5 | 0 | 1 | 1 | 71 (1) | 32, 29, 0 |
| 0 | 1e-09 | 6 | 0 | 0 | 0 | 0 | 0, 0, 0 | |
| 7 | 1e-06 | 6 | 0 | 0 | 0 | 0 | 2, 0, 0 | |
| Sizes | 0.00 | 1e-09 | 6 | 0 | 0 | 0 | 0 | 0, 0, 0 |
| 0.07 | 1e-06 | 6 | 0 | 0 | 0 | 0 | 1, 0, 0 |
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(Tol) tolerance; (Ctgs) contigs; (F−) false-negative; (F+) false-positive; (Qs) questionable.
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The data set has perfect data, 80% overlap, and 689 clones with lengths 160 kb.
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↵Chimeric contigs, i.e., sequences from different chromosomes.
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↵In parentheses is the number of contigs with Q clones.
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↵The triplet represents the out-of-order coordinates for adjacent clones, out-of-order coordinates for adjacent nonburied clones, and adjacent clones that do not have overlapping coordinates.
