Table 2.
Example of Similarity Search Results Using BLASTN, BLASTX, and TBLASTX
| Accession no. | Clone ID | E-value | Organism | Putative identity |
| BLASTN | ||||
| AQ367695 | toxb0002J16f | 5e-90 | tomato | 17S–25S ribosomal DNA spacer |
| AQ367792 | toxb0001C22f | 3e-70 | tomato | rbcS3Agene for ribulose 1,5-bisphosphate carboxylae/oxygenase small subunit |
| AQ368209 | toxb0001N20f | 5e-69 | tomato | 1-aminocyclopropane-1-carboxylate synthase (ACC4) gene |
| AQ368316 | toxb0002I05f | 6e-68 | tomato | gene for cell wall degrading polygalacturonase |
| AQ367218 | toxb0002C04f | 2e-55 | tomato | cytosolic Cu,Zn superoxide dismutase (Sod) gene and dehydroquinate |
| AQ368051 | toxb0001P17r | 1e-44 | tomato | LAT59gene 5′–flanking region, expressed during pollen maturation |
| BLASTX | ||||
| AQ367638 | toxb0002D20f | 3.7-60 | L. pimpinellifolium | (AJ002236) Hcr9-9E |
| AQ367206 | toxb0002A12r | 3.7e-50 | tomato | (U65391) PRF |
| AQ367838 | toxb0001I12f | 1.9e-18 | tomato | (X95269) LRR protein |
| AQ368350 | toxb0002M01r | 8.1e-18 | tomato | probable lipid transfer protein precursor |
| TBLASTX | ||||
| AQ367838 | toxb0001I12f | 3e-17 | Capsicum annuum | (AF082727) leaf mRNA cDNA clone I23 similar to leucine-rich-repeat protein |
| AQ367265 | toxb0002G06r | 3e-27 | A. thaliana | ATTS0294 Gif cDNA clone YAP201T7 5′ similar to tomato protein P59 precursor |
| AQ367696 | toxb0002J16r | 4e-84 | Medicago truncatula | 00559 MtRHE cDNA 5′ similar to 26S rRNA |
| AQ367633 | toxb0002D14r | 8e-16 | Saccharum sp. | EST149 sugarcane leaf roll cDNA clone D64-rev similar to 5′ end |
