LETTER | Research

Human gamma-satellite DNA maintains open chromatin structure and protects a transgene from epigenetic silencing

    • 1 NIH;
    • 2 National Cancer Institute;
    • 3 Duke University;
    • 4 Pfizer Global Research and Development;
    • 5 University of Wisconsin;
    • 6 National Institute of Allergy and Infectious Diseases
Published January 13, 2009. https://doi.org/10.1101/gr.086496.108
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cover of Genome Research Vol 36 Issue 7
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Abstract

The role of repetitive DNA sequences in pericentromeric regions with respect to kinetochore/heterochromatin structure and function is poorly understood. Here, we use a system for studying how repetitive DNA assumes or is assembled into different chromatin structures. We show that human gamma-satellite DNA arrays allow a transcriptionally-permissive chromatin conformation in an adjacent transgene and efficiently protect it from epigenetic silencing. This gamma-satellite DNA activity depends on binding of Ikaros proteins involved in differentiation along the hematopoietic pathway. Given our discovery of gamma-satellite DNA in pericentromeric regions of most human chromosomes and a dynamic chromatin state of gamma-satellite arrays in their natural location, we suggest that gamma-satellite DNA represents a unique region of the functional centromere with a possible role in preventing heterochromatin spreading beyond the pericentromeric region.

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