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Bacteriovorax bacteria" > The chromatin landscape of the histone-possessing Bacteriovorax bacteria

  • Georgi K. Marinov
  • Benjamin Doughty
  • Anshul Kundaje
  • William J. Greenleaf
  • First Published November 21, 2024

k-mer analysis" > Seamless, rapid, and accurate analyses of outbreak genomic data using split k-mer analysis

  • Romain Derelle
  • Johanna von Wachsmann
  • Tommi Mäklin
  • Joel Hellewell
  • Timothy Russell
  • Ajit Lalvani
  • ... [+1 authors] ...,
  • Leonid Chindelevitch
  • Nicholas J. Croucher
  • Simon R. Harris
  • John A. Lees
  • First Published October 15, 2024

Allele-specific transcription factor binding across human brain regions offers mechanistic insight into eQTLs

  • Ashlyn G. Anderson
  • Belle A. Moyers
  • Jacob M. Loupe
  • Ivan Rodriguez-Nunez
  • Stephanie A. Felker
  • James M.J. Lawlor William E. Bunney Blynn G. Bunney Preston M. Cartagena Adolfo Sequeira Stanley J. Watson
  • ... [+6 authors] ...,
  • Huda Akil
  • Eric M. Mendenhall
  • Gregory M. Cooper
  • Richard M. Myers
  • First Published August 16, 2024

cis-regulatory elements" > Probabilistic association of differentially expressed genes with cis-regulatory elements

  • Brian S. Roberts
  • Ashlyn G. Anderson
  • E. Christopher Partridge
  • Gregory M. Cooper
  • Richard M. Myers
  • First Published April 17, 2024

Characterization of human transcription factor function and patterns of gene regulation in HepG2 cells

  • Belle A. Moyers
  • E. Christopher Partridge
  • Mark Mackiewicz
  • Michael J. Betti
  • Roshan Darji
  • Sarah K. Meadows Kimberly M. Newberry
  • ... [+2 authors] ...,
  • Laurel A. Brandsmeier
  • Barbara J. Wold
  • Eric M. Mendenhall
  • Richard M. Myers
  • First Published October 18, 2023

C. Thomas Caskey (1938–2022)

  • Richard A. Gibbs
  • Aravinda Chakravarti
  • Evan E. Eichler
  • Eric D. Green
  • Richard M. Myers
  • Anne C. Ferguson-Smith
  • Kateryna D. Makova
  • Hillary E. Sussman
  • First Published February 17, 2022

Deborah A. Nickerson (1954 –2021)

  • Aravinda Chakravarti
  • Evan E. Eichler
  • Richard A. Gibbs
  • Eric D. Green
  • Richard M. Myers
  • Hillary E. Sussman
  • First Published January 24, 2022

Domain-adaptive neural networks improve cross-species prediction of transcription factor binding

  • Kelly Cochran
  • Divyanshi Srivastava
  • Avanti Shrikumar
  • Akshay Balsubramani
  • Ross C. Hardison
  • Anshul Kundaje
  • Shaun Mahony
  • First Published January 18, 2022

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

  • Brian S. Roberts
  • E. Christopher Partridge
  • Bryan A. Moyers
  • Vikram Agarwal
  • Kimberly M. Newberry
  • Beth K. Martin
  • Jay Shendure
  • Richard M. Myers
  • Gregory M. Cooper
  • First Published April 20, 2021

Dissecting the regulatory activity and sequence content of loci with exceptional numbers of transcription factor associations

  • Ryne C. Ramaker
  • Andrew A. Hardigan
  • Say-Tar Goh
  • E. Christopher Partridge
  • Barbara Wold
  • Sara J. Cooper
  • Richard M. Myers
  • First Published July 2, 2020
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