Performance for Gene Predictors Including TwinScan and Retrained GlimmerM in Addition to the Programs Listed in Table 1
CG | MG | CE | ME | WE | SN | |
|---|---|---|---|---|---|---|
| SC-5 | 1385 (78%) | 17 (1%) | 6952 (93%) | 196 (3%) | 22 | 98% |
| SC-3 | 1345 (75%) | 24 (1%) | 6911 (92%) | 194 (3%) | 34 | 98% |
| SC-5g | 1320 (74%) | 16 (1%) | 6878 (92%) | 173 (2%) | 37 | 98% |
| LC2-3 | 1293 (73%) | 12 (1%) | 6810 (91%) | 156 (2%) | 77 | 99% |
| LC1-3 | 1206 (68%) | 14 (1%) | 6692 (89%) | 207 (3%) | 48 | 98% |
| TS | 1200 (67%) | 17 (1%) | 6569 (87%) | 299 (4%) | 66 | 96% |
| GM2 | 563 (32%) | 10 (1%) | 5321 (71%) | 673 (9%) | 386 | 93% |
[i] SC-5 indicates SC using all five gene prediction programs; SC-3, SC using three gene prediction program; SC-5g, SC using five gene prediction programs and no alignment data; LC2-3, LC2 using three gene prediction programs; LC1-3, LC1 using three gene prediction programs; TS, TwinScan; and GM2, newer GlimmerM output. The three prediction programs used by SC-3, LC2-3, and LC1-3 are TwinScan, GeneMark.hmm, and GM2.