Real and simulated third-codon position variation within humans and between primates
Dataa | Pwb | Hwc | Pbb | Hbc | σd | max_we | w > 5f | w > 10f | w > 5, b = 0g |
|---|---|---|---|---|---|---|---|---|---|
| Real | 0.190 | 270 | 0.624 | 583 | 0.058 | 11 | 9 | 1 | 5 |
| α = 0.1 | 0.069 | 187 | 0.257 | 243 | 0.404 | 9.8 | 14.2 | 1 | 0.6 |
| α = 0.5 | 0.161 | 254 | 0.543 | 487 | 0.247 | 9.1 | 10.7 | 0.5 | 1.4 |
| α = 1 | 0.180 | 230 | 0.611 | 529 | 0.148 | 7.7 | 8.5 | 0 | 1.9 |
| α = 10 | 0.218 | 170 | 0.651 | 555 | 0.055 | 5 | 1.4 | 0 | 0.8 |
a Data set analyzed: real, or simulated by using four distinct γ shape parameters (10 simulations each, average results are given)
b Proportion of variable sites within humans (Pw) or between primates (Pb)
c Total homoplasy within humans (Hw) or between primates (Hb)
d Correlation coefficient between the site specific parsimony scores within humans vs. between primates
e Maximal site-specific parsimony score within humans
f Number of sites showing a within-humans parsimony score higher than five, respectively 10
g Number of sites showing a within-humans parsimony score higher than five and a between-primates parsimony score equal to zero