Exon Level Per Transcript-Pair Comparison to Manual Annotations
Exact pairs | Sn | Sp | Exact pairs (coding) | Sn (coding) | Sp (coding) | |
|---|---|---|---|---|---|---|
| chr13 | 82% | 0.73 | 0.78 | 93% | 0.83 | 0.90 |
| chr14 | 80% | 0.69 | 0.77 | 90% | 0.78 | 0.88 |
| chr6 | 80% | 0.73 | 0.76 | 92% | 0.85 | 0.89 |
[i] Only exons that are part of a transcript-pair are compared with each other. An annotated exon is considered found if there is at least one predicted exon with exact matching boundaries in a given transcript-pair. The second and fourth columns give the percentage of exact exon matches from the total number of exon-pairs formed within the transcript-pairs for all-exons and for coding exons, respectively. The sensitivity and specificity values are also given. The values are higher for coding exons, which indicates that UTR annotation remains a difficult problem.