Table 2.

Correlation between chromosomal organization and linkage disequilibrium in windows of 100, 500, and 1000 kb

CEU sample
YRI sample
CHB+JPT sample
Chromosome organization
100 kb
500 kb
1000 kb
100 kb
500 kb
1000 kb
100 kb
500 kb
1000 kb
Within 5 Mb of centromere 0.13* 0.16* 0.17* 0.13* 0.17* 0.19* 0.12* 0.15* 0.17*
Within 10 Mb of centromere 0.10* 0.12* 0.14* 0.11* 0.14* 0.16* 0.09* 0.11* 0.13*
Within 15 Mb of centromere 0.08* 0.10* 0.12* 0.09* 0.12* 0.14* 0.07* 0.09* 0.11*
Within 5 Mb of telomere -0.15* -0.19* -0.21* -0.14* -0.18* -0.21* -0.14* -0.17* -0.20*
Within 10 Mb of telomere -0.21* -0.26* -0.29* -0.20* -0.26* -0.29* -0.19* -0.25* -0.27*
Within 15 Mb of telomere -0.23* -0.29* -0.32* -0.22* -0.28* -0.32* -0.22* -0.27* -0.31*
Within 5 Mb of heterochromatin 0.09* 0.11* 0.12* 0.09* 0.12* 0.14* 0.09* 0.11* 0.13*
Within 10 Mb of heterochromatin 0.08* 0.09* 0.11* 0.08* 0.10* 0.13* 0.08* 0.10* 0.12*
Within 15 Mb of heterochromatin 0.05* 0.06* 0.07* 0.06* 0.08* 0.10* 0.05* 0.06* 0.08*
Large genomic duplications 0.07* 0.07* 0.06* 0.07* 0.06* 0.05 0.07* 0.07* 0.06*
Large genomic duplications (cis) 0.05* 0.04* 0.03 0.06* 0.03 0.01 0.04* 0.03 0.02
Large genomic duplications (trans)
0.06*
0.10*
0.09*
0.07*
0.09*
0.09*
0.07*
0.10*
0.10*

* Correlation is significant at P < 0.0001 level