Comparison of the accuracy of splice site prediction between different gene prediction programs using manual annotation as a standard
Number of identical splice sites | |||
|---|---|---|---|
| Sensitivity | Specificity | ||
| EAnnot | 86.2% (17874/20724) | 85.5% (17874/20901) | |
| Ensembl | 84.4% (17489/20724) | 82.3% (17489/21258) | |
| Fgenesh | 66.1% (13698/20724) | 35.6% (13698/38484) | |
| Genscan | 62.1% (12870/20724) | 30.3% (12870/42538) | |
[i] (Sensitivity) Number predicted correctly over total number annotated manually.
(Specificity) Number predicted correctly over total number predicted.