Table 2.

Submotifs of the complete (S1) and the nonredundant (S2) sequence sets

1
2
3
4
5
6
7
8
9
10
11
1 (1) 1 (-) 100 102
4 (1) 1 (-) 86 3
9 (1) 1 (+) 76 4
14 (1) 1 (+) 76 6 117
22 (1) 1 (+) 81 2
R1 CCACATAACCCACTCGAGTCG 21 43 43 11 U1 (1) 1 (+) 95 52
U2 (1) 1 (+) 91 52 104
1 (2) 1 (+) 100 4
6 (2) 1 (-) 91 3 11
8 (2) 1 (+) 76 4
U1 (2) 1 (+) 100 37 37
4 (1) 1 (+) 100 7
7 (1) 1 (-) 100 6 15
22 (1) 1 (-) 100 2
R2 AAACTAGGTTGTATG 15 67 60 07 U3 (1) 1 (-) 100 52 52
2 (2) 1 (-) 100 4
3 (2) 1 (+) 100 4 11
6 (2) 1 (+) 100 3
2 (1) 1 (-) 86 7
3 (1) 2 (-+) 76; 100 6 × 2 = 12
4 (1) 2 (++) 81; 76 3 × 2 = 6
5 (1) 2 (++) 76; 76 3 × 2 = 6
7 (1) 1 (+) 81 6 64
9 (1) 1 (-) 81 4
10 (1) 1 (-) 76 10
R3 GTCTTCTCCATGTTGCTTTCT 21 57 19 20 11 (1) 1 (-) 71 7
20 (1) 1 (-) 91 6
2 (2) 1 (+) 86 4
3 (2) 2 (-+) 100; 95 4 × 2 = 8 33
4 (2) 2 (+-) 91; 76 4 × 2 = 8
5 (2) 1 (+) 81 8
12 (2) 1 (+) 81 5
U3 (2) 1 (-) 95 37 37
GGAGGTTGAGGTTGAGGATT 4 (1) 1 (+) 100 3
R4 GACCAGAAGCTGCTGGAAGT 57 51 65 03 5 (1) 1 (+) 100 3 6
GTTCTTGTAAAGCAGGA 6 (2) 1 (+) 100 3 3
2 (1) 1 (+) 100 7
10 (1) 1 (+) 100 10 22
13 (1) 1 (-) 100 5
R5 TCTACAAACCA 11 64 45 07 4 (2) 1 (+) 100 4
5 (2) 1 (+) 82 8 21
7 (2) 1 (-) 100 4
13 (2) 1 (-) 91 5
15 (1) 1 (+) 100 7
R6 AATGGAAGTATTGAAATTAAG 21 76 71 03 17 (1) 1 (-) 100 3 10
9 (2) 1 (+) 100 3 3
R7 AGGCGCGTAACCTAAATAGGG 21 48 67 02 2 (1) 1 (-) 100 7 7
2 (2) 1 (+) 100 4 4
2 (1) 1 (+) 100 7
4 (1) 1 (+) 90 3
5 (1) 1 (+) 80 3 23
R8 TTTTCTGTTG 10 70 20 07 11 (1) 1 (-) 80 7
16 (1) 1 (-) 90 3
U4 (1) 1 (-) 100 52 52
10 (2) 1 (-) 90 10 10
R9
TGCTGCGACCTCCTGTCACTA
21
43
33
02
8 (1) 1 (+) 100 7 7
9 (2)
1 (+)
100
3
3

[i] Designations of the columns: 1. Submotif name; 2. Submotif consensus sequence; 3. Sequence size, bp; 4. A+T-pair content, %; 5. Purine content, %; 6. Number of sites; 7. Motifs in which submotifs are located; 8. Number of copies and orientation (in parentheses) of a submotif in a motif; 9. Percentage of homology to the S1 set motifs; 10. Copy number of a copy in a sample multiplied by copy number of a submotif in the given motif; 11. Total copy number in a sequence sample.