Table 1.

AluYb loci identified in this study

Product size
Namea
Forward primer sequence (5′-3′)
Reverse primer sequence (5′-3′)
Chr. loc.b in human
Direct repeat
A. T.c
Filled
Empty
Pan1* ACCAAAATGCAGGTCTCTTGTT CCTTTTCTTTATGCGCATTTCT 5:171753413 AAAACATCCTC 55 892 561
Pan2* CCTGGCCTATTGATGATTTTCT GCCTCAGAAGGAGTTTTGTTGT 12:42243314 AAAACTCCCTCTGAG 58.6 481 129
Pan3* CCGATATCATGCATTTTCCATA TGGCAAGAAAGACATGATTGAA 3:155790154 AAAAATAAATACCA 60 728 412
Pan4* AGGGCAATTACTATGTTTCAGGA TTTTTCACGTTCTTACAATAGAACA 18:66254955 ACAATAGAACATTCCT 55 403 52
Pan5* GCTTCATTTCTGCCTGCTTATT TCTGCAAATTTAACTCCAAACC 10:97871078 AAAAACAGCAAGT 55 504 181
Pan6* GGCATTTTAAGCTCTTTGATAGC CATGCTAGACATGAGAACAAACA 2:183429337 GAAATAGTTCCTGCT 60 749 257
Pan7* GCAGCTGCTTTCTGTCTCTGTA TCAGCAACAATAAGGAACGAAG 3:49401325 AAAAGAAACCAGTCAC 55 502 175
Pan8* CCCAGATTGATTCTTCCCTTTA ATGCCAGTTCCATTATTTCCAC 8:101149947 AAGAGAGAAGAAA 55 834 506
Pan9* CCAGGACCCAGAGCTTAGTAGT TCCAAAGGAATATGATGTCACAG 14:52808462 AAAGAAATTGATT 55 434 111
Pan10* TGTGGCAGATTTTATTGTAGACTT TCCATGCTCTTGGAGTAAATGA 4:72958275 AAAAAAATTCATCTG 55 500 174
Pan11* AGGAGCTCTTCTTAGAAAATCCA AAAGATCCACGACTAGGCACAT 2:214354697 AAAGAAAAAGGAAAAAAC 60 521 193
Pan12* CGTTAGCTCTGGATTTTTCATGT TATTCTCCACCATGACCAAGTG X:93270745 AAAAATTAGCCGGGCA 60 871 548
Gorilla7# TGAAGAATTGGGAGGAAAAGAA ACTGCAAGATTGCTGTTCACAT 13:32666822 AAAAAATGACTAACAG 55 583 261
Gorilla8# GCACTCATCCGTACCTGACTTA TCAGAGCATCTCTTTCTGTCCA 2:229645741 AAAAAAGGAGGCAA 60 540 219
Gorilla16# AATTCTTTGGGGTAGGTGGAAT CACAACGTACACCCTAAAATGG X:24004038 AAGAGTTGCAGTTGCTCA 55 531 202
Gorilla19# CAAGTTGTGTTATGTGAGGTTTTGA GGAGCCCTAATGTATAGCATGG 7:10262937 AAGAGAGTAGATCTT 59.5 597 279
Gorilla21# AACAAGAGATGCTAGAAAGCCAAT CGGAGTTGGACACATTTCTTTT 1:51666132 AAAGAAAGGAGGA 55 749 434
Pygmy4#
GCAGTTTTTCCCATTTGCTCTA
TTGAGTCTTTTTCTGGGCTTTC
2:130058820
AAGACTTACTATA
55
600
281

a (*) Retrieved from chimpanzee genome draft sequence; (#) identified using PCR display methodology.

b Chromosomal location.

c Annealing temperature.