Distribution of functions of genes that affect Ty3 mobilization
Type | Deletion reduced transposition | Deletion enhanced transposition |
|---|---|---|
| Cell wall, membrane | FUR4, PKR1, FTR1,a FET3a | LDB7, ECM29, TIR3 |
| Chromatin modification and transcription | EAF7, IES6, CTK2, BAS1, SIN4,b,c SSN3 | HTL1, ADA2, SGF73, RSC1, BRE2, BDF1, MBP1, NGG1, GAL80,a CKB2, NCE4, SWD1b |
| DNA maintenance | RAD24 | ELG1,d MRC1, RAD6, HPR5, SGS1,d CSM3, EST3, CLN2, CLB2, BRE1, RRM3d |
| Nuclear transport | KAP120, ASM4/NUP59 | NPL3, SAC3, NUP133,c NUP84,c NUP120, NUP100 |
| RNA processing | DBP3,c DEG1, DHH1, KEM1, DBR1c | POP2c |
| Translation | ASC1, GCN20, RPL6Ac | SRO9, RPS24ba |
| Mitochondrial related | TCM62, SOD2, FLX1, ATP2, ATP18, | MRS1, FMP21 |
| Cytoskeletal | SLA1, ARP5, BUB1 | BEM2, BUD13, SRV2 |
| Secretion/vesicular trafficking/vacuolar | VAM7, ATG17,c VPH1,c VPS27, VPS28, VPS36, VPS25, SNF8/VPS22, VPS20, SNF7/VPS32, RIM20, BRO1,b VPS4, MNT4, FAB1, VPS9,c PEP7, CLC1, RIM13,b VPS51 | VAC8,d SEC22,c APL2, YEA4, YTA7, ATG2, VPS24 |
| Stress/chaperone/modification | CPR7, RUB1, BLM3 | RTT101,d TPS2,c HMF1 |
| Metabolic | DEP1,c SPO22, ARV1 | FCY22, LAG1, |
| Ty1 | RTT103,d RTT109d | |
| Other | BAR1 | |
| Unknown | YAL027W, YDL118W, YDR067C, YDR493W/FMP36, YFR012W, YGL057C, YJR120W, YNL224C, YOL083W, YPL225W, YMR158W-B | YIL090W, YLL044W,a YBL094C, YBR284W,b YHR177W, YLL030C, YLR235C, YBR277C, YDR290Wa,b,e |
a Change in transcript levels (Ideker et al. 2001) or low fitness (Giaever et al. 2002) in galactose carbon source.
b Aye et al. screen (Aye et al. 2004).
c Ty1: Griffith et al. screen (Griffith et al. 2003).
d Ty1: Scholes et al. screen (Scholes et al. 2001).
e ORF overlaps RTT103.