Number, mean match length, and standard deviation of high scoring pairs (HSPs) and CAGS
HSPs/CAGS | Number | Mean length (bp) | Standard deviation (bp) |
|---|---|---|---|
| HSPs (before filtering) | 10.27 × 106 | 51 | 69 |
| HSPs (after filtering) | 2.75 × 106 | 114 | 86 |
| CAGS | |||
| Genic | 1.69 × 105 | 195 | 246 |
| Intergenic | 6.04 × 104 | 101 | 115 |
| Total | 2.30 × 105 | 170 | 223 |
[i] The HSPs statistics are derived before and after filtering the BLASTZ output using 60% identity and 40-bp match length cut-off values.