Table 1.

Some sources of functional genomics data collections for S. cerevisiae

Database
Data type
References
URL
SGD Several Ball et al. 2001 http://www.yeastgenome.org
CYGD/MIPS Several Guldener et al. 2005 http://mips.gsf.de/genre/proj/yeast/
bioGRID Genetic/physical interaction Breitkreutz et al. 2003 http://biodata.mshri.on.ca/yeast_grid/
BIND Genetic/physical interaction Bader et al. 2003 http://www.blueprint.org/bind/bind.php
DIP Physical interaction Xenarios et al. 2002 http://dip.doe-mbi.ucla.edu/dip/Main.cgi
MINT Physical interaction Zanzoni et al. 2002 http://160.80.34.4/mint/
IntAct Physical interaction Hermjakob et al. 2004b http://www.ebi.ac.uk/intact/index.html
Deletion Consortium Phenotype analysis Giaever et al. 2002; Winzeler et al. 1999 http://www-sequence.stanford.edu/group/yeast_deletion_project/data_sets.html
GEO MicroArray Edgar et al. 2002 http://www.ncbi.nlm.nih.gov/geo/
Array Express MicroArray Brazma et al. 2003 http://www.ebi.ac.uk/arrayexpress/
YMGV MicroArray Marc et al. 2001 http://www.transcriptome.ens.fr/ymgv/
SMD MicroArray Gollub et al. 2003 http://smd.stanford.edu/
OPD
Mass Spec/Proteomics
Prince et al. 2004
http://bioinformatics.icmb.utexas.edu/OPD

[i] List of the major sources of yeast functional genomics data; in addition to the main SGD site, yeast genome data are also distributed via SGD Lite (http://sgdlite.princeton.edu), a lightweight yeast genome database, which is built from GMOD components and can be downloaded and installed locally.