Top 117 SNPs in genotype (HapMap/CEU Nov. 2004)—EST (UniGene) comparison
Gene | SNP | CHR | P-valuea | Gene | SNP | CHR | P-value | Gene | SNP | CHR | P-value |
|---|---|---|---|---|---|---|---|---|---|---|---|
| STEAP1 | rs2888782 | 7 | 5.62E-19 | MAPK7 | rs2233072 | 17 | 6.68E-05 | HTATIP2 | rs3824886 | 11 | 4.48E-04 |
| STEAP1 | rs4015375 | 7 | 1.88E-17 | IFI27 | rs2799 | 14 | 6.80E-05 | ALS4 | rs2296869 | 9 | 4.61E-04 |
| FCGR3A | rs396716 | 1 | 7.92E-12 | WASPIP | rs7739 | 2 | 6.82E-05 | TXNDC13 | rs1058007 | 20 | 4.82E-04 |
| ANKRD15 | rs3739586 | 9 | 3.24E-10 | FLJ10287 | rs687513 | 1 | 7.65E-05 | RNASE3 | rs2073342 | 14 | 4.94E-04 |
| WBSCR16 | rs7375 | 7 | 1.07E-09 | ADPGK | rs9460 | 15 | 9.38E-05 | CXCL16 | rs1051007 | 17 | 4.98E-04 |
| DPYSL2 | rs11863 | 8 | 1.51E-09 | TF | rs1799852 | 3 | 9.46E-05 | HRG | rs1042445 | 3 | 5.10E-04 |
| PSMB4 | rs7172 | 1 | 1.69E-09 | TM4SF4 | rs9793 | 3 | 1.07E-04 | PBK | rs1052874 | 8 | 5.10E-04 |
| AUP1 | rs2231250 | 2 | 2.90E-09 | METAP1 | rs1238741 | 4 | 1.11E-04 | PAX8 | rs1478 | 2 | 5.30E-04 |
| CORO1C | rs2111211 | 12 | 2.93E-08 | MRC1 | rs941 | 10 | 1.13E-04 | ACHE | rs7636 | 7 | 5.30E-04 |
| RBM33 | rs6962201 | 7 | 1.40E-07 | DHX34 | rs1064202 | 19 | 1.13E-04 | RPAP1 | rs3743031 | 15 | 5.50E-04 |
| TACC3 | rs8389 | 4 | 5.38E-07 | SRP14 | rs7535 | 15 | 1.20E-04 | SLC35C2 | rs1044369 | 20 | 5.60E-04 |
| TXNIP | rs7211 | 1 | 6.98E-07 | PURB | rs9701 | 7 | 1.23E-04 | DOCK2 | rs3763048 | 5 | 6.20E-04 |
| ACRBP | rs1045553 | 12 | 7.73E-07 | LIPC | rs690 | 15 | 1.27E-04 | LOC51321 | rs3213690 | 17 | 6.40E-04 |
| CYP3A5 | rs15524 | 7 | 1.05E-06 | ANKRD13 | rs1044994 | 12 | 1.32E-04 | FVT1 | rs6810 | 18 | 6.40E-04 |
| RUVBL2 | rs1062708 | 19 | 2.27E-06 | SLC7A9 | rs2287884 | 19 | 1.46E-04 | IL17R | rs2229151 | 22 | 6.40E-04 |
| PSCA | rs1045605 | 8 | 3.29E-06 | GRWD1 | rs1643487 | 19 | 1.62E-04 | ADAT1 | rs3743598 | 16 | 6.50E-04 |
| PLK1 | rs27770 | 16 | 4.06E-06 | WBSCR18 | rs8891 | 7 | 1.73E-04 | SLC20A2 | rs6841 | 8 | 6.80E-04 |
| EMID1 | rs743920 | 22 | 4.99E-06 | COASY | rs615942 | 17 | 1.75E-04 | HADHB | rs1056471 | 2 | 6.80E-04 |
| SPATA5L1 | rs1365610 | 15 | 7.28E-06 | SNX6 | rs9264 | 14 | 1.81E-04 | PRL | rs6239 | 6 | 6.90E-04 |
| GCS1 | rs1063588 | 2 | 8.51E-06 | KBTBD8 | rs7623808 | 3 | 1.99E-04 | GABBR1 | rs2267633 | 6 | 6.90E-04 |
| PSCA | rs1045574 | 8 | 8.69E-06 | C22orf5 | rs1059804 | 22 | 2.00E-04 | PTPN12 | rs3750050 | 7 | 7.00E-04 |
| UBXD2 | rs1050115 | 2 | 9.11E-06 | CXCL5 | rs425535 | 4 | 2.04E-04 | FLJ12788 | rs2301984 | 2 | 7.00E-04 |
| VPS39 | rs7086 | 15 | 1.04E-05 | DMTF1 | rs3747807 | 7 | 2.04E-04 | LOC133957 | rs13474 | 5 | 7.00E-04 |
| C20orf111 | rs9346 | 20 | 1.78E-05 | BBOX1 | rs2305095 | 11 | 2.31E-04 | QDPR | rs3733570 | 4 | 7.30E-04 |
| GATM | rs1049508 | 15 | 1.83E-05 | GLT8D2 | rs3817602 | 12 | 2.37E-04 | NOB1P | rs3811348 | 16 | 7.30E-04 |
| GPX3 | rs11548 | 5 | 1.86E-05 | ITGA3 | rs3744538 | 17 | 2.44E-04 | HCRTR1 | rs2271933 | 1 | 7.80E-04 |
| SLC25A28 | rs880568 | 10 | 1.88E-05 | PPIL5 | rs2281836 | 14 | 2.48E-04 | FCGBP | rs741143 | 19 | 7.90E-04 |
| SURF2 | rs12763 | 9 | 2.30E-05 | ISG20L2 | rs3795737 | 1 | 2.72E-04 | OAS1 | rs2660 | 12 | 8.00E-04 |
| BTBD1 | rs1045742 | 15 | 2.61E-05 | FLJ12681 | rs3751667 | 16 | 2.82E-04 | GRN | rs5848 | 17 | 8.10E-04 |
| MOBK1B | rs2272239 | 2 | 3.25E-05 | NMNAT2 | rs549191 | 1 | 2.94E-04 | KLP1 | rs7478 | 19 | 8.30E-04 |
| PAH | rs1042503 | 12 | 3.31E-05 | CD200 | rs1050572 | 3 | 3.43E-04 | LOC133957 | rs1054174 | 5 | 8.30E-04 |
| KIAA0020 | rs12171 | 9 | 4.06E-05 | GEMIN6 | rs1056104 | 2 | 3.58E-04 | DEXI | rs3087519 | 16 | 8.70E-04 |
| CYB5R3 | rs137124 | 22 | 4.07E-05 | RPUSD4 | rs2276312 | 11 | 3.63E-04 | TRAF3 | rs1131877 | 14 | 9.00E-04 |
| TRIM4 | rs2572010 | 7 | 4.39E-05 | ARTS-1 | rs27434 | 5 | 3.81E-04 | SEC61A1 | rs1042907 | 3 | 9.10E-04 |
| FBLN1 | rs9682 | 22 | 4.69E-05 | CYP3A7 | rs10211 | 7 | 3.94E-04 | PRSS35 | rs3812141 | 6 | 9.20E-04 |
| ARNT2 | rs7484 | 15 | 5.38E-05 | CD1E | rs1065457 | 1 | 4.02E-04 | TRUB2 | rs2231645 | 9 | 9.60E-04 |
| PSCA | rs2976396 | 8 | 5.50E-05 | RUNX3 | rs13157 | 1 | 4.08E-04 | NUMA1 | rs3750912 | 11 | 9.70E-04 |
| CCDC3 | rs2280076 | 10 | 6.07E-05 | SERPINA3 | rs6116 | 14 | 4.09E-04 | ERAL1 | rs2242345 | 17 | 9.90E-04 |
| MYBL2 | rs285162 | 20 | 6.10E-05 | DLAT | rs9371 | 11 | 4.12E-04 | BACE1 | rs638405 | 11 | 1.00E-03 |
a P-value for difference in comparison of EST- and CEPH-derived allele frequencies.