Table 1.
New loci related to previously reported miRNA precursors
Precursor loci (Rfam ID)a | Intergenic regionb | miRNA sequencec |
|---|---|---|
| MIR157a | At1g66790 |  |
| MIR157new (MIR156h) | At5g55840 | UUGACAGAAGAAAGAGAGCAC |
| MIR158 | At1g55600 |  |
| MIR158new (MIR158a) | At3g10750 | CCAAAUGUAGACAAAGCA |
| MIR159a | At1g18080 |  |
| MIR159new | At2g46260 | UUGGAUUGAAGGGAGCUCC |
| MIR164a | At2g47590 | UGGAGAAGCAGGGCACGUGC |
| MIR164new (MIR164c) | At5g27810 | UGGAGAAGCAGGGCACGUGC |
| MIR164new | At3g01210 | UUCGAGAAGCAGGGCACG |
| MIR167a | At3g22890 |  |
| MIR167new (MIR167c) | At3g04770 | AAGCUGCCAGCAUGAUCU |
| MIR169 | At3g13410 |  |
| MIR169new (MIR169b) | At5g24830 | AGCCAAGGAUGACUUGCC |
| MIR169new (MIR169d) | At1g53690 3.1 kb | AGCCAAGGAUGACUUGCC |
| MIR169new (MIR169e) | At1g53690 1.1 kb | AGCCAAGGAUGACUUGCC |
| MIR169new (MIR169f) | At3g14390 | AGCCAAGGAUGACUUGCC |
| MIR169new (MIR169g) | At4g21600 | AGCCAAGGAUGACUUGCC |
| MIR169new (MIR169h) | At1g19380 | AGCCAAGGAUGACUUGCCUG |
| MIR169new (MIR169i) | At3g26820 9.0 kb | AGCCAAGGAUGACUUGCCUG |
| MIR169new (MIR169j) | At3g26820 8.6 kb | AGCCAAGGAUGACUUGCCUG |
| MIR169new (MIR169k) | At3g26820 5.4 kb | AGCCAAGGAUGACUUGCCUG |
| MIR169new (MIR169l) | At3g26820 5.1 kb | AGCCAAGGAUGACUUGCCUG |
| MIR169new (MIR169m) | At3g26820 2.8 kb | AGCCAAGGAUGACUUGCCUG |
| MIR169new (MIR169n) | At3g26820 2.4 kb | AGCCAAGGAUGACUUGCCUG |
| MIR170 | At5g66050 | UGAUUGAGCCGUGUCAAUAUC |
| MIR170new (MIR171b) | At1g62040 | UGAUUGAGCCGUGCCAAUAUC |
| MIR170new (MIR171c) | At1g11740 | GAUUGAGCCGUGCCAAUAUC |
| MIR171 | AT3g51380 | UGAUUGAGCCGCGCCAAUAUC |
| MIR172a1 | At2g28060 |  |
| MIR172new (MIR172d) | At3g55520 | UGAGAAUCUUGAUGAUGCUGCAG |
a miRNA name as registered in Rfam (http://www.sanger.ac.uk/Software/Rfam/mirna/). Loci that were found by findMiRNA pior to recent reports are indicated with a superscript `new'
b Intergenic regions North of indicated AGI pseudogenes that contain the precursor locus (loci). Each MIR169 precursor locus of intergenic region At2g26820 are distinguished by their locations on the 10.7-kb intergenic region North of At2g26820 relative to the ATG start codon of At2g26820 in kilobase pairs
c Bolded nucleotides indicate the known miRNA sequences. Gray-bolded nucleotides were not indicated by the findMiRNA algorithm