Table 1.

General Results of the Analysis of 74 Bacterial Chromosomes

SSR
TR
SPIDR
Others
Chromosome
Length (kb)
CR E = R
E
R
E
R
E
R
E
R
A. pernix 1670 224 3 3 9 9 3 953 8 22
A. tumefaciens 1 2842 342 1 1 12 12 0 0 6 27
A. tumefaciens 2 2075 239 4 4 11 12 0 0 8 115
A. tumefaciens 3 543 26 0 0 1 0 0 0 0
A. aeolicus 1551 177 3 4 8 7 0 0 14 79
A. fulgidus 2178 222 3 4 8 8 3 1783 5 25
B. halodurans 4202 332 11 20 22 92 3 676 20 279
B. subtilis 4215 330 2 4 16 68 0 0 15 66
B. burgdorferi 911 71 2 3 5 94 0 0 1 3
B. melitensis 1 2117 243 8 12 17 51 0 0 5 16
B. melitensis 2 1178 131 1 3 10 21 0 0 0 0
B. aphidicola Sg 641 71 4 6 3 5 0 0 4 10
B. aphidicola Ap 641 64 7 11 2 3 0 0 4 9
C. crescentus 4017 665 26 34 37 78 0 0 41 280
C. jejuni 1641 229 3 3 10 17 0 0 7 31
C. muridarum 1069 54 3 32 4 17 0 0 3 19
C. pneumoniae 1230 105 5 6 6 18 0 0 5 19
C. tepidum 2155 246 6 38 22 161 1 720 7 42
C. trachomatis 1046 79 1 7 5 12 0 0 2 7
C. acetobutylicum 3941 364 19 117 33 319 0 0 21 342
C. perfringens 3031 275 10 84 16 125 0 0 8 91
D. radiodurans 1 2649 470 9 9 29 36 0 0 23 162
D. radiodurans 2 412 71 1 1 4 55 0 0 4 25
E. coli K12 4639 383 8 45 27 297 2 108 19 181
E. coli O157:H7 5528 549 7 22 55 370 0 0 31 220
F. nucleatum 2174 351 6 4 9 15 0 0 26 280
H. influenzae 1830 210 18 249 26 71 0 0 10 45
Halobacterium NRC-1 2014 423 12 12 13 39 0 0 21 99
H. pylori 1668 343 38 261 46 161 0 0 28 122
L. lactis 2366 384 3 5 16 125 0 0 27 172
L. innocua 3011 368 3 27 11 107 1 39 30 1383
L. monocytogenes 2945 354 2 45 12 1397 0 0 27 203
M. acetivorans 5751 1363 87 288 735 3600 2 698 165 1914
M. jannaschii 1665 244 4 13 13 13 6 836 21 380
M. kandleri 1695 152 2 4 3 3 0 0 8 244
M. loti 7036 1158 22 120 73 3906 0 0 67 691
M. mazei 4096 891 149 657 558 2044 2 1554 132 1073
M. thermoautotrophicum 1751 321 4 8 24 39 2 2290 18 113
M. genitalium 580 60 17 71 2 58 0 0 6 72
M. leprae 3268 159 27 102 98 129 0 0 1 2
M. pneumoniae 816 137 8 15 18 71 0 0 5 42
M. pulmonis 964 116 23 134 4 1505 0 0 10 43
M. tuberculosis 4412 605 32 375 80 292 2 391 122 3405
N. meningitidis 2184 717 37 683 29 1075 1 134 86 942
Nostoc PCC7120 6414 814 51 554 679 2615 2 378 118 1846
P. multocida 2257 217 4 62 11 229 2 906 11 92
P. aeruginosa 6264 1076 8 48 42 408 0 0 58 461
P. abyssi 1765 143 5 9 1 2 2 505 5 52
P. aerophilum 2222 200 5 8 5 5 2 1186 10 264
P. horikoshii 1739 151 3 3 2 2 5 1558 7 45
R. solanacearum 3716 617 21 131 26 98 0 0 41 540
R. conorii 1269 114 4 89 8 95 0 0 1 5
R. prowazekii 1112 43 1 1 8 13 0 0 0 0
S. typhimurium 4857 379 16 123 19 220 2 691 23 244
S. meliloti 3654 476 19 144 28 186 0 0 29 153
S. aureus 2815 417 7 73 25 949 0 0 40 356
S. coelicolor 8668 1148 138 418 416 1098 0 0 103 772
S. pneumoniae 2161 300 7 8 38 3653 0 0 13 76
S. pyogenes 1852 177 4 6 13 40 0 0 12 93
S. solfataricus 2992 253 6 12 22 70 5 5619 6 38
S. tokodaii 2695 240 3 5 14 23 5 6232 15 78
Synechocystis sp 3573 472 10 61 19 475 0 0 25 183
T. acidophilum 1565 68 0 0 3 3 1 570 1 3
T. maritime 1861 162 3 479 3 2 4 387 7 58
T. tengcongensis 2689 248 6 88 10 10 3 4063 2 4
T. volcanium 1585 61 0 0 2 2 2 280 1 6
T. pallidum 1138 79 3 2 7 60 0 0 4 37
U. urealyticum 752 72 14 25 6 48 0 0 2 4
V. cholerae 1 2961 193 10 42 18 248 0 0 8 58
V. cholerae 2 1072 119 0 0 13 45 0 0 23 520
X. axonopodis 5176 864 41 91 162 573 1 165 49 337
X. campestris 5076 895 49 185 159 850 0 0 77 925
X. fastidiosa 2679 359 38 239 66 898 0 0 25 254
Y. pestis
4654
532
39
130
221
833
0
0
34
233

[i] The table displays the length of the chromosome, and the results for CR, SSR, TR, SPIDR, and “Others” classes of repeats. For each class, the number of elements (E) and the number of the repeats those elements contain (R) are displayed. For CR, these two quantities are similar (by definition).