Correlation (R) Between the Propensity for Gene Loss, Substitution Rates, Gene Expression Level, and the Number of Protein-Protein Interactions
Expression in | |||||||
|---|---|---|---|---|---|---|---|
| PGL | Yeast | Worm | Human | Interactions in yeast | |||
| PGL | N/A | −0.179 | −0.120 | −0.202 | −0.341 | ||
| P-distance a | 0.336 | −0.312 | −0.260 | −0.359 | −0.188 | ||
| PAM (average from A.t.) b | 0.368 | −0.164 | −0.133 | −0.204 | −0.169 | ||
| JTT (average from A.t.) | 0.317 | −0.271 | −0.226 | −0.299 | −0.178 | ||
| JTT (three-kingdom average) | 0.403 | −0.286 | −0.227 | −0.311 | −0.213 | ||
| JTT (average from A.t., γ-corrected) | 0.300 | −0.230 | −0.198 | −0.263 | −0.165 | ||
a Different method for evolutionary distance (a surrogate for substitution rate) calculation are introduced in Methods.
b A.t., Arabidopsis thaliana.