Markup | Genome Research

Table 7.

Phylogenetic Specificity

Programs		Trained on		Nucleotide accuracy-AC		Exon accuracy−(ESn+ESp)/2
Programs		Trained on		human	murine	human	murine
`FGENES`	human	0.85	0.82	0.67	0.68
`GeneMark.hmm`	human	0.83	0.84	0.56	0.51
`Genie`	human	0.88	0.89	0.73	0.67
`Genscan`	human	0.89	0.92	0.72	0.70
`HMMgene`	human	0.90	0.92	0.74	0.79
`Morgan`	vertebrate	0.64	0.75	0.43	0.44
`MZEF`	human	0.65	0.66	0.59	0.58

[i] The HMR195 dataset was split into two species subsets containing 103 human and 92 murine sequences. For each subset and each program, AC and (ESn+ESp)/2 were averaged over all sequences belonging to the particular subset.