YAC End STSs and Their Chromosomal Locations
| Name | Primer sequences | Size (bp) | Chromosomal assignment |
| A 89B10L | TGAAACTGTTTTTGGCAGGTAGG | 306 | 4, 7, 13, 21, 22, X, Y |
| GTAGGATGGGCAGAAGTGGTCAG | |||
| 891B10R | TTATTTTGCCGNGCTTCAAGACCT | 96 | 4, 13, 21 |
| GAGAGCCAGTGTCCTTATACAAAG | |||
| 2C9L | ACGCCTGCTGTGTTCTCTTGGACT | 168 | 13,21 |
| TGATGGATCGGTGAATTTGCTCTG | |||
| 2C9R | AATGAGGTCAAATGAACAATACAA | 150 | 4, 9, 13, 14, 21 |
| TCAGCAGTCAGAAGAAAAGGAA | |||
| 4E9L | TGATGAATGAGGTGACTGTG | 102 | 3, 4, 13, 15, 21, 22 |
| AACTTTACGTTTCCCTTTCC | |||
| 4E9R | AATCTCCATGGTGTTTGAAC | 183 | 3, 4, 13, 14, 15, 21, 22, Y |
| ATCCAGAATTTGTAGGGCTT | |||
| 2E4L | TTTGTGTTTTAATGCCTTCT | 156 | 13, 14, 15, 21, 22 |
| TGCTACAAACTTGAGACTTT | |||
| 2E4R | TGACACTTAAATGAGCTGCT | 100 | 13, 14, 21 |
| TTCAAATTTCTGAAATCCAA | |||
| B 1F8R | TCTTGGCCCTAGTCTGGTCCACTC | 181 | 13, 14, 15, 21, 22, Y |
| AGAGCCAGGGTGGGTCCTCTGT | |||
| 5A12R | CGTAGCAAGTATGTTTTCAAAGAA | 51 | 4, 13, 14, 15, 21, 22 |
| AGCCACCAAGACCCACCTTA | |||
| 3A8R | ACTTAATAATTTGCCCACCAT | 58 | 4, 7, 13, 14, 15, 21, 22, Y |
| AACCAAAGAAATGTAGATTTACC | |||
| 831B6R | CTTTGTGAGCGCGGCAGACT | 145 | 13,21, Y |
| TAGAGAACGTGGACGGATTATTTT | |||
| 2C2R | ACGGTTTACGTTTCCCTTTCCTAA | 111 | 13, 14, 15, 21, 22 |
| TGGTGCATTATTGATGAATGAGGT | |||
| C 829D2R | AAAGCACGTTGAAAGGTCATAC | 243 | 9, 13, 15, 20, 21 |
| ACAGCCTTTACAGTGTTGAAGTA | |||
| 5B7L | CATGCGTGCCCAGCTACACTTGA | 60 | 4, 13, 14, 15, 21, 22, Y |
| ACATGGGCACGCATCTTT(C/T)TGC | |||
| D 4C7L | TGTCTGGGAGTGCTAGAAGT | 94 | 20 |
| ATGCCTCCAGGTTTCTCTAT | |||
| 4C7R | CCTCTATAGGACAGCAGGAA | 70 | 4 |
| CAGACAGCATTCTAGGTGCT | |||
| G32G11L | ATGTTTTGAGGGGTGGATTGTTTA | 247 | 5, 11, 22 |
| TCTGTTGCCTGGTGACTGGAC | |||
| G32G11R | CAGTTGAAATGGTTGTATGA | 100 | 20 |
| ATCCAGTTGAGTTTATCCA | |||
| B35E11L | CCAGGATATGAAATGTCAGCT | 110 | 5, 18 |
| ATCTCGATTTTTATAGCTCAACTC | |||
| 1B2L | AGGGACTGAAATAAAATGAAAC | 88 | 14 |
| CAATGTGCAAAAATAAACTGA | |||
| 1B2R | ACTCAATTACCTTTTTCCTCCATC | 112 | 9 |
| TTCAGAAAATTTGATTTGAGGAGA | |||
| 837F5L | CTTCAATGCCCAGATACAGATGAA | 93 | 9, 13, 14, 15, 21, 22, Y |
| CCCCGCCGACTTTATTTAGCT | |||
| 837F5R | TTGAACAAGGAAGAAATCCAAAAC | 100 | X |
| CAAGTCCTGGGCTTCCCTTTAC | |||
| 965D4L | TAAATTTGAAGTTGTTGCCTAATG | 163 | 14 |
| TCCTTAATGGATTTCTGATGGA | |||
| 965D4R | CTGCTTTCAGGGATGGGCTTAA | 100 | 4, 22, Y |
| AAAAGATGATTCCCAGTCCCACAT | |||
| F9B6R | GTGGGCCTTAATGCAATGATTTC | 129 | 1 |
| TTGGCATCCCCTGGCTTGTAT | |||
| 3G8L | CATCATAAATAAACAAAAACATTAGA | 128 | 11 |
| CATGCAAGCTCCATTTAGAG | |||
| 1B8L | AAGGCTTCTTGGAAAGGAACT | 93 | 1, 3, 4, 13, 14, 21, 22 |
| TTGTGATTGGTATGGGAGAATC | |||
| 1B8R | AGAAATAAAACTNGCANGGG | 100 | 3 |
| GTATGANTTCACCCACATCT |
[i] YAC addresses followed by L and R indicate left andright YAC end STSs, respectively.
[ii] (A) STSs of YACs with both ends mapping to chromosome 21.(B) YACs with one end mapping to chromosome 21 and one end homologous to satellite repeat sequences. (C) YACs with one end isolated and mapped to chromosome 21. (D) YACs with one or two ends not mapping to chromosome 21.