Identities of the 21 Probes Sets Representing Genes that Were Differentially Expressed between the NOD and B10 Strain Groups and Were Known to Co-localize with Published Idd Loci Other thanIdd3, Idd5,and Idd9
| Iddlocus | Gene | UniGene | Fold-change (B10/NOD) |
| Idd1 | Mouse MHC class I Q8/9d cell surface antigen | Mm.88752 | 1.30 |
| Idd1 | Mouse MHC class I Q8/9d cell surface antigen | Mm.88752 | 1.28 |
| Idd1 | MHC [A.CA/J(H-2K-f)] class I antigen | Mm.34332 | 1.19 |
| Idd1 | Histocompatibility 2, class II, locus DMa | Mm.16373 | 1.22 |
| Idd1 | Histocompatibility 2, class II antigen E beta | Mm.22564 | 1.29 |
| Idd1 | Histocompatibility 2, class II antigen E beta | Mm.22564 | 1.23 |
| Idd1 | Histocompatibility 2, K region | Mm.16771 | 1.33 |
| Idd1 | Histocompatibility 2, M region locus 3 | Mm.14437 | 1.30 |
| Idd1 | Histocompatibility 2, T region locus 10 | Mm.87776 | 1.41 |
| Idd1 | Histocompatibility 2, T region locus 22 | Mm.88783 | 1.31 |
| Idd1 | Histocompatibility 2, T region locus 23 | Mm.35016 | 1.25 |
| Idd4 | Small inducible cytokine A5 (Scya5) | Mm.3370 | 1.56 |
| Idd6 | Kirsten rat sarcoma oncogene 2, expressed | Mm.31530 | 7.41 |
| Idd7 | CD79a antigen | Mm.1355 | 1.31 |
| Idd7 | CEA-related cell adhesion molecule 2 | Mm.117098 | 1.61 |
| Idd7 | Paired-Ig-like receptor A1 | Mm.87798 | −1.43 |
| Idd7 | Avian reticuloendotheliosis viral (v-rel) oncogene related B | Mm.1741 | 1.67 |
| Idd7 | 99% Avian reticuloendotheliosis viral (v-rel) oncogene related B | Mm.1741 | 1.37 |
| Idd8 | Vinculin | Mm.27206 | −1.26 |
| Idd8/12 | Protein kinase C, delta | Mm.2314 | 1.29 |
| Idd13 | Proliferating cell nuclear antigen | Mm.7141 | 1.24 |