Table 5.

Haemophilus influenzae TUs Predicted to Belong to the CRP Regulon

Operon Site sequence Position Score
TUs Orthologous to Training Set TUs
ansB TTATGTGATCGAGATCATAAAT −10218.78
cyaA AATTGTGATTTATGTCACATTT −9023.59
galR AACCGTGATCTTTGTCACAAAA −14517.09
TTTTATGATTTAGTTCATACTT −10413.74
galTKM TTTTGTGACAAAGATCACGGTT −8517.09
AAGTATGAACTAAATCATAAAA −12613.74
glpT TTTTGTGATATTGATCACAATA −18621.10
ATTTGTGAAACACTTCACATTT −13521.58
mtr TGATGTGAAAAATTCAATATT −31911.14
sdaCA AAATTTTAACTTGATCACAATT −14115.67
TTTTTTGCTTTGATTTACAATA −36610.23
Category I
arcA AACTATGATTTAGATCACAAAA −13017.84
argR-HI1208 TTCTATGATCTAGTTCACATTT −12518.68
aspA AAATGTGATCTTCATCAAGTTT −7118.39
brnQ TATTGTGACAAAATTCACATTT −9620.49
cdd ATAAGTGATCAAGATCACAGTT −11719.14
cmkA TTCTGTGATCCATCTCACAATC −20420.06
cydAB AAATGTGATCTATATAGCATTT −23417.77
CAATTTGATCTAAGTCAATTAA −29811.86
dsbD TTTTGTGATCTAAATCATAGTT −8417.84
fdhD TATTGTGATCTAGATCATAAAT −7319.77
frdABCD TTTTTTGAGGTAGATCACAAAA −14718.19
gapdH TGATTTGATATAGATCACAAAA −14518.14
genX TTTTGTGATCTACCTCAAAAAA −5718.19
glpABC AAATGTGAAGTGTTTCACAAAT −18021.58
TATTGTGATCAATATCACAAAA −12921.10
glpR ATCTGAGATCTAGATCACAGAA −9618.12
gmk TTTTGTGATCTATATCAAATCA −27818.14
hemX-HI0602.1-hemY AAATGTGACATAAATCACAATT −23723.59
hslVU AAATATGATCAACTTCACATTT −12919.07
HI0053-HI0052-HI0051 AACTGTGGCGTGGATCACAGTT −12720.80
HI0074-HI0073 TTTTGTGATCAATATCACAATG −9618.33
TTATTAGAAAAATATCAAATTA −15011.87
HI0082-HI0083 TTTCTTGATCCACGTCACATTA −26517.10
HI0145 AAATGAGAAGTTGATCACATTT −18420.01
HI0146-HI0147 AAATGTGATCAACTTCTCATTT −18820.01
HI0310 TAATTTGACACGCATCACAAAT −11619.12
TAAAATGAAAAAAATCACGCTT −510.80
HI0432-HI0431-hupA TAACGTGAGATTTGTCACAATT −417.61
HI0485.1-atpBEFHAGDC AAGTGTGATTTATATAACACTT −9518.96
HI0495-HI0494 AAATGTGAAGTTGATCATATTT −11219.07
HI0521-HI0520 AACTGTGATCTTCCTCACGTTT −8318.26
HI0522 AAACGTGAGGAAGATCACAGTT −15218.26
HI0744-secB ATTTATGATCTCGATCACATAA −14618.78
HI1010-HI1011- TTCTGTGATCTAGATCTCAGAT −8518.12
HI1012-HI1013
HI1126 ATTTGTGACTTGTATCACATTT −8622.72
HI1176 TTTTGTGATCTTGATCACATAT −15222.64
HI1315 TTCTGTGATCCATCTCACAATC −7617.91
HI1349 AACTGTGATCTTGATCACTTAT −17919.14
HI1427 TTTTGTGATCTCGATCACAAAT −12022.06
lctP TTCTGTGATCCATCTCACAATC −9820.06
mdh AAATGTGAACTAGATCATAGAA −10418.68
metR-HI1738-HI1737 AATTGTGATCTAGTTCTCAAAA −10619.75
AATTGCTAAACGGATCAAATAT −37711.55
AAATGTTTTGCACCGCACATTT −30911.36
mglBAC ATTTGTGACATGGATCACAAAT −9222.19
nhaA AAATGTGAATTTTGTCACAATA −11420.49
nrdD CATTGTGATATTGATCACAAAA −20718.33
TAATTTGATATTTTTCTAATAA −15311.87
ompP2 AAATGTGATCTCGATCAGATTT −16120.10
Operon Site sequence Position Score
pckA AAATGAGATCTACTTAACATTT −8817.54
ATTTTTGCTCTATATCACAATA −14816.26
pntAB TTTCGTGATCCCTATCACAATA −17118.29
sucAB GAGTTTGAACTAGATCACAAAT −8317.64
uspA AATTGTGATCTAGTACACAGTT −8918.58
uxuRA TTTTGTGAGCCATATCACAAAA −520.80
xylAB AACTGTGATCCACGCCACAGTT −12117.19
xylFGH AACTGTGGCGTGGATCACAGTT −13517.19
Category IIA
artPIQM ATTCGTGTTAAAAATCTCAATT 710.71
citCDEF ATTAGTGAAATAATTTAAAATT −26311.17
cspD TTTTGTGATCTACTTATCATTT −14615.77
TATTGTAAAATGGTTCAATAAT 1111.29
folE-HI1446 AAATTTGCAATTTTTCTCATTT −7811.28
fucRIKUAP AAGTGCGGTCGGTTTCACACCA −17010.52
ndh TAATGTAACATTTTTAACAATT −4313.07
HI0017 AATTTTAATTTAGATCAAATTT −14815.42
HI0257 AAATGAGACATAGATCATCCTT −13013.52
HI1030-HI1029-HI1028 TAATATAAAACGAATCACATTT −4415.46
HI1031 AAATAGGATCTAGATCACAAAA −14814.71
HI1032 TTTTGTGATCTAGATCCTATTT −5014.71
Hi1245 AAGTTTGCAGTTCGTCACAATT −9213.23
HI1394 TATTGTGATGAAATTTTTATTT −18810.35
HI1612-sfsA CTTTGTGGTCTCGCTCACTTTT −11712.19
nifR3-fis AAATGCGAATCGGTTCATACCA −311.10
oppABCDF TTATTAGACACAACTCACAAAA −13213.97
ribA AACTGAAATCCCCATCACAATT −29414.71
rpS6 AATTGTGCCTTGCATCTCAATG −40012.04
sodA TTTAATGATCTAAATCAATTTT −10010.20
spr CATTGTGTAAAAGATCACAAAA −11013.16
ung AAATTTGATCTAAATTAAAATT −13215.42

[i] Listed are predictions from categories I and IIA and TUs containing orthologs to genes in the training set.