C. albicans Retrotransposons with Internal Regions
| Element | LTR | tRNA primer[ii] | Composite element[iii] | gag/pol ORFs[iv] | Group[v] |
| Tca1 | alpha | Arg frag. | yes (5614) | no | copia |
| Tca2 | gamma | Arg frag. | yes (6426) | intact | copia |
| Tca3 | nu | N.D. | N.D. | partial | gypsy |
| Tca4 | san | Arg frag. | yes (6895) | intact | copia |
| Tca5 | omega | iMet frag. | yes (5588) | intact | copia |
| Tca6 | kappa | Arg frag. | N.D. | frag.s | copia |
| Tca7 | zeta | iMet frag. | N.D. | partial | copia |
| Tca8 | beta | iMet | N.D. | partial | gypsy |
| Tca9 | psi | Ile | yes (5146) | no | gypsy |
| Tca10 | chi | Gln | yes (2261) | no[vi] | N.D. |
| Tca11 | eta | Ile | N.D. | N.D | gypsy |
| Tca12 | whio | Arg frag. | N.D. | N.D. | copia |
| Tca13 | moa | Ala | yes (5060) | no | gypsy |
| Tca14 | lambda | iMet frag. | N.D. | N.D. | copia |
| Tca15 | kahu | iMet frag. | N.D. | partial | copia |
| Tca16 | huia | N.D. | N.D. | frag.s | gypsy |
[i] (N.D.) Not determined
[ii] (frag.) These elements have a PBS complementary to an internal region of the primer tRNA, starting in the anticodon stem, 2 bp from the anticodon loop.
[iii] Length of the composite elements are given in base pairs.
[iv] (Intact) Long ORFs present containing all of the motifs characteristic of full-length, functional retrotransposons; (partial) long ORFs are present but no full-length ones discovered yet; (frag.s) no long ORFs, but short regions of homology to other retroelement ORFs are present; (no) no long ORFs present nor any homology to other retroelements in databases.
[v] In some cases, these assignments are tentative and based solely on the forms of the PBS or their positions relative to the LTRs.
[vi] The internal region of Tca10 does contain ORFs, but they show no similarity to any known retrotransposon ORFs.