List of Known MMU16 Genes Present in Three Copies in Ts65Dn Mice and Their Expression Level as Detected by the Number of Corresponding Tags in Normal and Ts65Dn SAGE
| Gene name | GenBank No. | pA site | TAG sequence | Ts65Dn | Normal | |||||||||
| App | X59379 | yes | A | T | A | G | C | T | T | T | C | T | 26 | 23 |
| Grik1 | X66118 | yes | G | A | T | A | G | A | G | G | G | A | 0 | 0 |
| ll10rb | U53696 | no | A | A | C | A | T | T | T | T | G | G | 0 | 0 |
| Sod1 | M35725 | yes | A | G | A | A | A | C | A | A | G | A | 7 | 10 |
| Tiam1 | U05245 | yes | A | T | G | T | G | T | C | T | A | T | 1 | 0 |
| Cbfa2 | D13802 | yes | C | A | C | A | G | A | C | C | C | C | 0 | 0 |
| Mak-V | AF055919 | no | A | G | T | A | A | G | G | A | C | T | 0 | 1 |
| Synp | No mouse homolog | |||||||||||||
| Rack17 | No mouse homolog | |||||||||||||
| lfnar2 | AF013486 | yes | G | A | G | A | G | C | T | A | C | G | 3 | 0 |
| lfngt1 | No mouse homolog | |||||||||||||
| C21orf4 | No mouse homolog | |||||||||||||
| Gart | U01024 | yes | G | C | C | A | A | A | C | T | G | A | 1 | 1 |
| Son | AF1935606 | yes | T | G | T | A | T | T | A | C | A | G | 1 | 0 |
| Itsn Esi1 | AF132478 | no | G | A | C | C | C | C | A | G | C | C | 0 | 0 |
| Itsn Esi1L | AF132481 | no | A | G | G | T | C | C | C | C | A | C | 0 | 0 |
| Atp5o | No mouse homolog | |||||||||||||
| Slc5a3 | NM_017391 | no | T | T | T | G | T | T | T | A | T | T | 0 | 0 |
| Mirp1 | No mouse homolog | |||||||||||||
| Kcnq1 | U70068 | yes | T | G | C | A | G | C | C | T | G | C | 0 | 1 |
| Dscr1 | No mouse homolog | |||||||||||||
| Clic3 | No mouse homolog | |||||||||||||
| Ifngr2 | U69599 | yes | C | C | T | T | T | A | T | T | C | C | 3 | 0 |
| Cbr | U31966 | yes | G | T | G | A | A | C | C | C | A | A | 9 | 3 |
| Sim2 | D64135 | yes | T | T | G | T | G | T | G | T | A | A | 0 | 0 |
| Ttc3-Tprd | AB008516 | yes | C | C | T | T | A | C | A | C | T | T | 4 | 4 |
| Dyrk1a | U58497 | no | G | T | C | G | A | C | G | C | G | G | 0 | 0 |
| Kcnj6 | U51122 | yes | T | G | T | G | A | G | A | T | G | C | 0 | 0 |
| Erg | S66169 | no | G | G | C | T | C | C | T | A | T | C | 0 | 0 |
| Ets2 | J04103 | no | C | C | A | T | C | C | T | G | G | G | 0 | 2 |
| Hmg14 | X53476 | yes | T | A | A | T | A | A | A | A | A | T | 1 | 0 |
| Pcp4 | X17320 | yes | A | A | G | A | G | A | A | A | C | C | 46 | 39 |
| Dscam | No mouse homolog | |||||||||||||
| Mx1 | M12279 | yes | T | G | T | T | T | G | C | T | T | C | 1 | 0 |
| Mx2 | J03368 | yes | C | T | C | C | A | G | C | T | C | C | 0 | 0 |
[i] For each gene (Gene name, GenBank no.) the corresponding most 3′ tag was used to determine the tag frequency in SAGE libraries derived from normal or Ts65Dn mouse male brains.