Table 5.

Summary of Sequence Diversity in the Core and OLA-Typed Samples

Population Sample Sample size No. of variable sites[i] θ (×10−4)[ii] π (×10−4)[iii] D (Tajima 1989)
JacksonCore48145.75 ± 2.174.36 ± 2.41−0.736
OLA-typed1686163.64 ± 1.074.52 ± 2.700.521
North KareliaCore48135.33 ± 2.055.62 ± 2.970.163
OLA-typed904143.45 ± 1.094.56 ± 2.720.701
RochesterCore48135.33 ± 2.056.37 ± 3.300.586
OLA-typed1768132.94 ± 0.935.06 ± 2.961.467
TotalCore144216.90 ± 2.145.65 ± 2.95−0.507
OLA-typed4358204.07 ± 1.074.92 ± 2.900.449

[i] Excluding indel at 5229A in the core samples and 5229A and 5229B in the OLA-typed samples.

[ii] Expected heterozygosity per nucleotide; SE derived from variance estimate, assuming no recombination (Watterson 1975).

[iii] Average pairwise sequence difference; SE derived from stochastic and sampling variance, assuming no recombination (Tajima 1993).

[iv] All values of D are nonsignificant.