BACs with Positive FISH Signals on Multiple Chromosomal Loci
| BAC | Band position | Positive STS | Additional FISH signals | Possible reason (sequences) |
| A-321F1 | 16p13.1 | D16S2779 | 1p34 | duplicated |
| A-29B12* | 16p13.1 | D16S2779 | 1p34 | duplicated |
| A-98H8 | 16p13.1 | D16S2714 | 11q23 | duplicated |
| A-972D3 | 16p13.1 | D16S2853 | random multiple loci | |
| A-219D1 | 16p13.1 | D16S2586E | 16p11.2 | duplicated |
| A-319E8 | 16p13.1, | D16S501 | 2q11.2 | duplicated |
| A-589H1** | 16p13.1-12 | D16S2794 | 16p11.2 | |
| A-376B3 | 16p12.3/13.13 | D16S2720 | 16p11.2 | duplicated |
| A-962B4 | 16p12/13.1 | D16S2586E/D16S2720 | 16p11.2 | duplicated |
| A-13F4 | 16p12-13.2 | D16S2696 | 16p11.2, 16q23 | duplicated |
| A-685D8* | 16p12-13.2 | D16S2696/D16S2794 | 16p11.2, 16q23 | duplicated |
| A-793D10 | 16p12/13.1 | D16S2696 | 16p11.2, 16q22 | duplicated |
| A-613E5 | 16p12/13.1 | D16S410 | 16p11.2 | duplicated |
| A-61E3 | 16p12-13.1 | D16S2717 | 16q22, 16q24, 16p11.2-12 | duplicated |
| A-101B6 | 16p11.2 | D16S2816 | pericentromeric signals on most chromosomes, strongest at 2p11.1 & 16p11.1 | repetitive |
| A-761H5 | 16p11.2 | D16S2882 | 16p13.1 | duplicated |
| A-575C2 | 16p11.2 | D16S298 | 16p13.1 | duplicated |
| 67N16 | 16p11.1 | 16p12-13.1, 16p13.3, 16q22 | duplicated | |
| A-280B4 | 16p11.1-p12 | 16q11.2 | duplicated | |
| A-1B11 | 16p11.1 | D16S2816 | all centromeres & 2p11.1 | repetitive |
[i] (*) Not used in contig map.
[ii] (**) This clone should be located in c16p11.1.