Table 3A.

Top 50 Tags Expressed at 25°C for Strain B3501

SAGE tag Frequency (65,399 total) Percentage Preliminary gene designation E-value of top BLASTx result Accession no.of BLASTx
gaacgatgct 6070.93%NO HITS[ii]
catttacata 5460.83%NO HITS[ii]
cgagtcgtat 5390.82%Iron permease2E-23 Schizosaccharomyces pombe Z67998
cgacagaccg 5290.81%Translation elongation factor 10.0/0.0[iii] Cryptococcus neoformans U81804
aaaaaaaaaa 4520.69%NO HITS[ii]
gtattgaccc 4300.66%Phosphoketolase1.00E-165/1.00E-106[iii] Lactococcus lactis AE006381
aatgactttt 4270.65%NO HITS[ii]
gcgttacttg 3480.53%Zinc transporter2E-27 Saccharomyces cerevisiae Z72777
tctttgatgt-3′ 3280.50%ADP, ATP carrier protein1.00E-110/2.00E-72[iii] Gossypium hirsutum AF006489
gtcgtagagt 3270.50%Enolase1E-131 S. cerevisiae J01322
atatgacata 3050.47%Glycine dehydrogenase0 S. pombe Z54308
caagtaattt 2930.45%NO HITS[ii]
catctattcc 2860.44%NO HITS[i]
ccagaagttg 2670.41%Mitochondrial thioredoxin2E-39/2.00E-54[iii] S. cerevisiae X59720
ttcggcaagg-5′ 2640.40%ADP, ATP carrier protein1.00E-115/1.00E-132[iii] G. hirsutum AF006489
ctccgccgag 2610.40%Pyruvate decarboxylase1.00E-72/3.00E-40[iii] Pichia stipitis U75310
gctctccagg 2500.38%Histone H31.00E-48/9.00E-64[iii] Mortierella alpina AJ249812
gctaacgctg 2380.36%Cyclophilin A5.00E-76/2.00E-91[iii] C. neoformans AF333996
gtcggtggta 2300.35%ATP synthase—β-chain0.0/3.00E-43[iii] Kluyveromyces lactis U37764
tcgagaatgg 2180.33%NO HITS[ii]
gacgatatat 2040.31%C-4 methyl sterol oxidase2E-84/2.00E-48[iii] S. pombe AL109832
cagagatgtg 1970.30%Nonhistone protein1.00E-6/7.00E-9[iii] S. cerevisiae Z94864
tctggtcgag 1870.29%Histone H47.00E-19/2.00E-38 Phanerochaete chrysosporium Z15134
aggaagagaa 1860.28%Hypothetical protein2.00E-22/5.00E-05[iii] Agaricus bisporus AJ271701
cgcggaaagg 1840.28%NO HITS[i]
aaatggtttg 1830.28%NO HITS[ii]
tagccgggaa 1820.28%NO HITS[ii]
tccttccgag 1790.27%GAPDH1.00E-112/0.0[iii] C. neoformans AF106950
atttccgccg 1780.27%Serine-threonine protein kinase7E-65 Mus musculus U48737
cacgttcacg 1680.26%Thioredoxin peroxidase2.00E-39/2.00E-64[iii] S. pombe AL031798
ataaaaaaaa 1590.24%NO HITS[i]
catattgaat 1570.24%Uracil ribosyl transferase3.00E-10 S. pombe Z98598
gcagatcgat 1540.24%60S ribosomal protein RPL393.00E-09/1.00E-13[iii] K. marxianus S53434
gctcctctta 1520.23%ATP synthase—α-chain2.00E-58/9.00E-46[iii] S. pombe M57955
aaagcgcgtt 1510.23%Inositol 1-phosphate synthase1E-144 Pichia pastoris AF078915
agtcctcttc 1500.23%60S ribosomal protein RPP21.00E-15 Alternaria alternata U87806
actaccttct 1490.23%Ribosomal protein RPP11E-13 C. elegans AF003139
ccatatgttt 1490.23%Glycogen phosphorylase6.00E-95/2.00E-40[iii] Dictyostelium discoideum M77492
actatcgcct 1420.22%Ubiquitin conjugating enzyme8.00E-45/2.00E-75[iii] Glomerella cingulata AF030296
cagcagttta 1390.21%NO HITS[ii]
agtggcagtt 1380.21%Opsin0.004/3.00E-21[iii] Leptosphaeria maculans AF290180
cattcgttca 1370.21%NO HITS[ii]
aattcgcttt 1330.20%14-3-3 Protein5.00E-84/1.00E-124[iii] Schizophyllum commune AY029473
tagcctttcg 1270.19%NO HITS[ii]
cgtgaggctg 1250.19%6-Phosphogluconate dehydrogenase1.00E-170/0.0[iii]
catacaggtc 1220.19%Glutamine synthase1.00E-133/1.00E-163[iii] A. bisporus Y12704
ggttacgctg 1210.19%Mitochondrial malate dehydrogenase1.00E-115[iii] S. cerevisiae J02841
taacgcataa 1170.18%NO HITS[ii]
ccggctaatg 1170.18%NO HITS[ii]
acatcgatct 1170.18%60S ribosomal protein RPL313E-25 Cyanophora paradoxa AJ005204

[i] Serial analysis of gene expression (SAGE) tag does not have an associated genomic contig at Stanford or expressed sequence tag (EST) at http://www.genome.ou.edu/cneo.html.

[ii] Identified EST or contig does not have a significant BLASTx result at http://www.ncbi.nlm.nih.gov/.

[iii] EST BLASTx result.