Searching Promoters for Genes with Known 5′ ESTs
| Programs | Training set of 102 promoters | Test set of 110 promoters | ||||
| true prediction (sensitivity) | false prediction (FP/All P) | undetected | true prediction (sensitivity) | false prediction (FP/All P) | undetected | |
| PROSCAN1.7 | 25 (25%) | 17 (40%) | 75 | 18 (16%) | 25 (58%) | 78 |
| NNPP2.0 | 41 (40%) | 46 (53%) | 31 | 20 (18%) | 71 (78%) | 30 |
| PromFD1.0 | 47 (46%) | 45 (49%) | 48 | 42 (38%) | 52 (55%) | 47 |
| promoter2.0 | 5 (5%) | 92 (95%) | 5 | 8 (7%) | 86 (91%) | 16 |
| TSSG | 52 (51%) | 13 (20%) | 37 | 33 (30%) | 32 (49%) | 45 |
| TSSW | 35 (34%) | 28 (44%) | 39 | 31 (28%) | 41 (57%) | 38 |
| CONPRO | 59 (58%) | 7 (11%) | 39 | 41 (37%) | 7 (15%) | 62 |
[i] CONPRO can find promoters for about 37% human genes. Of all the predictions made by CONPRO, about 85% are correct. Additional information is given in the legend of Table 1.