Table 4.

The Human Transcript Map (Example)

Chromo Clone From (bp) To (bp) GB4 (cR) Evidence HINT ID Description
16 AC002040 3177806831778186192.52(+0+0) AI128170_2ESTs
16 AC002040 3183116431831640192.52(+0+0) AI285970_4ESTs
16p12.2 AC025273 3196009232037384194.27(++0+) X87159_30Sodium channel, nonvoltage-gated 1, beta (Liddle syndrome)
16 AC025273 3205544532055838195.29(+0+0) AI635217_4RETINOPATHY PROTEIN (Score: 140)
16p12 AC025273 3208787032088023196.52(++0+) AB029003_296KIAA1080 protein
16 AC025273 3209692032097148195.29(+0+0) AI022922_3NEURONAL THREAD PROTEIN AD7C-NTP (Score: 243)
16 AC025273 3210967132109902195.29(+0+0) AW207413_1ESTs
16p12 AC002400 3215970932203727196.52(++0+) AB029003_296KIAA1080 protein
16 AC002400 3219453932194738195.26(+0+0) AI609753_1CG14939 PROTEIN (Score: 581)
16 AC002400 3221538532215802193.96(++0+) AA833716_22ESTs
16 AC002400 3221645132217395193.96(++0+) AW361820_26ESTs
16 AC002400 3221764432237865195.26(+0+0) AC002400_5GLUTAMYL-TRNA SYNTHETASE (Score: 329)
16 AC002400 3225120432264728195.26(+0+0) AC002400_34Ubiquitin-binding protein homolog human (Score: 2041)
16 AC002400 3226522732267320196.77(++0+) W22792_117ESTs
16 AC002400 3227552832275628195.26(+00+) AC002400_120NADH dehydrogenase (ubiquinone) 1, alpha/beta subcomplex
16 AC002400 3227788932278513196.17(++0+) H66286_10ESTs
16 AC009043 3236442132368017196.77(++0+) W22792_117ESTs
16 AC008870 3242555632540868196.77(++0+) AA811478_5DYNACTIN SUBUNIT P25 (Score: 167)
16 AC009043 3243402032437557196.77(++0+) AI697625_20ESTs
16 AC008870 3243719332447003196.77(++0+) AI697625_20ESTs
16 AC012185 3244102932441121193.96(+0+0) AW445082_3RETINOBLASTOMA BINDING PROTEIN 2 HOMOLOG 1 (Score: 111)
16 AC012185 3247445732474527193.96(+0+0) AA714835_9ESTs
16 AC012185 3247769632507184193.96(+0+0) U01038_83Polo (Drosophila)-like kinase
16 AC012185 3249302032493133193.96(+0+0) AA436947_7ESTs
16p11.2 AC012185 3249624132497643198.28(++0+) X07109_116Protein kinase C, beta 1
16 AC012185 3249705732498921193.96(+0+0) AC002302_4SID470P (Score: 160)
16 AC012185 3249977732500136193.96(++00) AA527435_16ESTs
16 AC012185 3250387832505108193.96(+0+0) AW294825_1ESTs
16 AC012185 3250758432508921193.96(+00+) AI732416_20IRE1, Saccharomyces cerevisiae, homolog of
16 AC012185 3251748032519058193.96(+0+0) AI676060_3IRE1 (Score: 222)

[i] Only a portion of the human 16p is presented. A more complete human transcript map is available as supplemental information from our Web site at http://pandora.med.ohio-state.edu/HINT Supplementary Table 14. Column 1, chromosome or cytoband information; Column 2, GenBank accession numbers for the genomic clones assembled in the GoldenPath map (July version); Columns 3 and 4, the start and end positions in base pair for each transcript consensus based on the GoldenPath chromosomal contigs (July version); Column 4, the GB4 positions for the genomic clones in cR, available from the Genemap'99 or the e-PCR map; Column 5, supporting or conflicting evidence (+ = supportive, − = conflicting, 0 = no data available) ordered by genomic and transcript radiation hybrid, fingerprint, and UNIGENE maps; Column 6, the consensus ID (HINT ID), defined by the GenBank accession number of the longest transcript followed by the number of the transcripts in the same UNIGENE clusters; Column 7, gene description derived from the original UNIGENE dataset and supplemented with additional protein homology information for the previously-anonymous ESTs. The newly annotated information can be found in the rows ending withBLAST scores.