Ability to Construct Scaffolds with CAP3 and PHRAP
| Data set | Length of answer sequence | No. of reads per kb | Ability to make scaffold with CAP3 | Ability to make scaffold with PHRAP |
| 188A7 | 112,773 | 10.6 | yes | yes |
| 201G24 | 184,666 | 10.8 | yes | yes |
| 213L3 | 135,545 | 10.3 | yes | yes |
| 257P13 | 184,998 | 10.1 | yes | yes |
| 488C13 | 187,237 | 11.1 | yes | yes |
| 501I4 | 231,464 | 11.7 | yes | no |
| 526N18 | 180,104 | 12.2 | yes | yes |