Potential UAS Motifs Found in Each Cluster
| Name | Genes | Group | Motifs | Sites (% genes) | Sites (% genes out of 256 controls) | Cho et al.(1998) |
| Cln2 | 58 | G1 | MCB:ACGCGT | 52 (62) | 15 (6) | + |
| SCB:CRCGAAA | 43 (52) | 33 (13) | + | |||
| Y‘ | 31 | G1 | RAP1:TGCACCW | 42 (71) | 33 (12) | − |
| ?:AGCSGCT, etc. | 32 (52) | 16 (3) | − | |||
| Fks1 | 38 | G1 | SCB:CRCGAAA | 26 (53) | 33 (13) | + |
| ?:TKCAKCTGCA | 4 (11) | 3 (1) | − | |||
| Histone | 9 | S | CCA:GcGAArytngrGAACr | 19 (100) | 0 (0) | − |
| NEG:CATTgnGCG | 18 (89) | 1 (0) | − | |||
| SCB:CGCGAAA | 7 (56) | 14 (5) | + | |||
| Met | 20 | S/G2 | Cbfl/Met/Met28:TCACGTG | 20 (60) | 17 (5) | − |
| Met31/Met32:AAAnTGTGG | 14 (55) | 12 (5) | − | |||
| Clb2 | 36 | G2/M | Mcm1(P-box):TTWCCyaawnnGGwAA | 55 (64) | 1 (0) | + |
| Mcm1(P-box):+Sff:(P)n2–4RTaAAYAA | 19 (47) | 0 (0) | − | |||
| Mcm | 38 | M/G1 | ECB:TTTCCcaATngGGAAA | 73 (79) | 1 (0) | + |
| ?:AAAGAAAA | 26 (53) | 20 (8) | − | |||
| Sic1 | 27 | M/G1 | SWI5:RRCCAGCR | 23 (48) | 23 (9) | − |
| ?:GCSCRGC | 12 (41) | 31 (11) | − | |||
| Mat | 13 | M/G1 | Ste12(PRE):TGAAACA | 10 (54) | 48 (18) | − |
| P‘+Q:tTTCCTaaTTrGknnnTCAATG | 8 (46) | 0 (0) | − | |||
| ?:WnAnnAGCCAnnnnWWnMAAAnA | 6 (46) | 2 (1) | − |
[i] (?) An unknown motif. Motif site counts (percent of genes containing the motif) in each cluster and in the control are also shown. (+ or −) The motif was found or not found in Cho et al. (1998). As Y‘ is full of repeats, there are many “motifs” that look significant on pure statistical ground. All sites were counted on both strands in the (−700, −1) region, except MCB:ACGCGT was counted on one strand and histone motifs were counted only in the commonly shared promoter regions.