Markup | Genome Research

Table 3.

Two Clusters of Correlated Contig Sequences a andb, with Highly Correlated (r > 0.94) Expression Profiles

Contig		Putative identity		Library EST counts
Contig		Putative identity		1073	535	307	499	961	75	1275	193	101	1009
(a)
1	PRO2_ORYSA 13-kD Prolamin	293	15	0	0	0	0	0	0	0	0
4	GLU5_ORYSA glutelin	183	9	0	0	0	0	0	0	0	0
5	GLU2_ORYSA glutelin type II	145	28	0	0	0	0	0	0	0	0
7	PRO1_ORYSA 10-kD prolamin	145	10	0	0	0	0	0	0	0	0
12	—	74	0	0	0	0	0	0	0	0	0
15	—	63	0	0	0	0	0	0	0	0	0
34	PRO7_ORYSA prolamin	29	4	0	0	0	0	0	0	0	0
35	GLU3_ORYSA glutelin type-A III	27	3	0	0	0	0	0	0	0	0
41	GLGB_ORYSA 1,4-α-glucan branching enzyme	26	1	0	0	0	0	0	0	0	0
53	GLGB_MAIZE 1,4-α-glucan branching enzyme IIB	21	0	0	0	0	0	0	0	0	0
83	—	11	0	0	0	0	1	0	0	0	0
125	PODK_MAIZE pyruvate phosphate dikinase	12	0	0	0	0	0	0	0	0	0
148	PHSL_VICFA α-1,4 glucan phosphorylase	10	0	0	0	0	1	0	0	0	0
171	ASPR_HORVU phytepsin	10	0	0	0	0	0	0	0	0	0
209	UGST_ORYSA granule-bound starch synthase	8	1	0	0	0	0	0	0	0	0
304	SUS2_HORVU sucrose synthase 2	6	1	0	0	0	0	0	0	0	0
366	—	6	0	0	0	0	0	0	0	0	0
367	—	6	0	0	0	0	0	0	0	0	0
378	—	5	1	0	0	0	0	0	0	0	0
(b)
3	RA05_ORYSA seed allergenic protein RA5	59	170	0	0	0	0	0	0	0	0
20	—	9	57	0	0	0	0	0	0	0	0
52	RA17_ORYSA seed allergenic protein RA17	5	21	0	0	0	0	0	0	0	0
95	IAA1_HORVU α-amylase inhibitor BMAI-1	2	16	0	0	0	0	0	0	0	0
114	P93615 ABA-induced plasma membrane protein	2	14	0	0	0	0	0	0	0	0
282	CDP1_ORYSA calcium-dependent protein kinase	0	8	0	0	0	0	0	0	0	0
308	P322_SOLTU probable protease inhibitor P322	1	7	0	0	0	0	0	0	0	0
481	OLE1_ORYSA oleosin 16 kD	0	6	0	0	0	0	0	0	0	0
488	—	0	6	0	0	0	0	0	0	0	0

[i] Contigs are listed with a putative identification, if available, corresponding to the best match in the SWISS-PROT/TrEMBL databases (score > 100; default scoring matrix). The expression profile for each contig is shown for the 10 libraries used (identified by dbEST library identifiers), arranged in the same order as in the library dendrogram (see Fig. 2).