Table 3.

Assembly statistics and misassembly rate for the Velvet de novo assembly and STM method applied to the Danio rerio simulated data set

1432tbl3

[i] Gasterosteus aculeatus (stickleback) proteome was used as reference for the STM method.

[ii] (No. of contigs) Number of contigs/scaffolds >100 bp; (Max length) length of the longest contig/scaffold; (Total length) summed length of all contigs/scaffolds; (No. of errors) number of misassemblies (and percent of misassemblies relative to the total number of contigs); (Percent of STM errors) percent of errors associated with the STM method excluding errors due to the de novo assembler.