Properties of Features That Are SFPs
| Polynucleotide | ||||
| N,NN,NNN 0 | NNNN 4 | NNNNN 5 | NNNNNN 6 | |
| SFPs | 2999 | 654 | 130 | 23 |
| nonSFPs | 73,761 | 13.080 | 2053 | 224 |
| 3.9% | 4.8% | 6.0% | 9.3% | |
| Chisq = 59, df = 3, p-value = 1.1e-12 | ||||
| Gene copy number | ||||||||||
| 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | |
| SFPs | 1216 | 921 | 491 | 244 | 205 | 124 | 85 | 85 | 72 | 338 |
| nonSFPs | 37,552 | 23,137 | 10,426 | 5142 | 2990 | 2045 | 1338 | 1219 | 896 | 3387 |
| 3.1% | 3.8% | 4.5% | 4.5% | 6.4% | 5.7% | 6.0% | 6.5% | 7.4% | 9.1% | |
| Chisq = 453, df = 9, p-value < 2.2e-16 | ||||||||||
[i] Features that contain polynucleotide repeats or that are in duplicated gene have higher levels of polymorphism. 3806 SFPs were scored at a 5% FDR threshold.