Summary of Satellite DNA Sequence Variations
| Satellite/source | Sequence | Changes | Types of changes# (%)[iv] | ||||||||||
| bp[i] | %[ii] | # | %[iii] | ||||||||||
| AATAT | A → T | A → G | A → C | T → A | T → G | T → C | Ins/del | TS | TV | ||||
| Junctions[v] | 7027 | 3.2 | 180 | 2.6 | 48 (27) | 43 (24) | 5 (3) | 55 (31) | 0 | 6 (3) | 23 (13) | 49 (31) | 108 (69) |
| Pure | 12,042 | 5.5 | 233 | 1.9 | 59 (25) | 59 (25) | 5 (2) | 75 (32) | 3 (1) | 12 (5) | 20 (9) | 71 (33) | 142 (67) |
| Total | 19,069 | 8.7 | 413 | 2.2 | 107 (26) | 102 (25) | 10 (2.5) | 130 (32) | 3 (0.7) | 18 (4.5) | 43 (10) | 120 (32) | 250 (68) |
| TTCTC | T → A | T → G | T → C | C → A | C → T | C → G | Ins/del | TS | TV | ||||
| Junctions[vi] | 807 | 0.1 | 10 | 1.2 | 1 (10) | 0 | 8 (80) | 1 (10) | 0 | 0 | 0 | 8 (80) | 2 (20) |
| Pure | 11,086 | 7.4 | 21 | 0.2 | 1 (5) | 1 (5) | 11 (52) | 0 | 4 (19) | 0 | 4 (19) | 15 (88) | 2 (12) |
| Total | 11,893 | 7.5 | 31 | 0.3 | 2 (6.5) | 1 (3.2) | 19 (61) | 1 (3.2) | 4 (13) | 0 | 4 (13) | 23 (85) | 4 (15) |
[i] Total bp in contigs
[ii] % of total satellite in γ1230, see Figure1
[iii] % of total sequence changed
[iv] % of all changes; TS = transitions (C ↔ T, A ↔ G), TV = transversions (A ↔ T, T ↔ G, C ↔ G, C ↔ A) (TS and TV summary percentages exclude insertions/deletions)
[v] Junctions between transposons and AATAT, and AATAT-TTCTC.
[vi] Junctions between AATAT-TTCTC and TTCTC-Maupiti.