Table 3.

Tandem Repeats >300 bp in 10q11

Position in 10p11 sequence Shortest high scoring periodicity No. of repeats % matches % indels Consensus length of other periodicities Repeat sequ repeat na
(1-25435)  5bp 1001.470010bp/26/98bpGGAAT Sate
(168190-170696)  5bp487.8662113bp/18/23bp CATTT
(207701-285997)  5bp 1000.4531510bp/15bp etc.GGAAT Sate
1-46495  5bp 995.869410bp/15bp etc.GGAAT Sate
79169-8064449bp 30.3921
170593-170958 121bp 3872

[i] Tandem repeats were identified with Tandem Repeat Finder using both stringent and relaxed search parameters (Benson 1999). Because repeat arrays are not homogeneous, a number of details are shown. The position in the sequence (column 1) indicates the extent of the entire array. The No. of repeats, % match, and % indels (columns 3–5) refer to the region defined by the shortest high scoring periodicity and not the entire array. Significant higher order periodicities are also shown, with the highest scoring periodicity being underlined and embolden. The 121bp repeat includes a 36bp Alu fragment. The sequence of the 49bp repeat is: GGCCGGTGTGAGGCAAGGGGCTCACGCTGACCTCTGTCAGCGT GGGAGG.