Summary of Suggestive Changes in Gene Expression Identified in Comparisons between the Strain Groups Shown in Table 2
| Comparison | No. of changes (unique) | No. of potential 1° changes | No. of control changes | ||||
| locus | tissue | up | down | ||||
| Idd3 | S | 1 (1) | 2 (2) | 0 | 2 | ||
| T | 4 (3) | 1 (1) | 0 | 1 | |||
| Idd5 | S | 38 (37) | 1 (1) | 0 | 1 | ||
| T | 7 (7) | 6 (6) | 0 | 1 | |||
| Idd3+5 | S | 30 (28) | 1 (1) | 2 | 2 | ||
| T | 48 (48) | 2 (2) | 4 | 2 | |||
| Idd9 | S | 9 (9) | 9 (6) | 7[ii] | 1 | ||
| T | 7 (7) | 4 (4)[iii] | 4[iii] | 2[iii] | |||
| Idd3, Idd5, Idd3+5, Idd9 | S | 0 (0) | 2 (2) | — | 0 | ||
| T | 2 (2) | 3 (3) | — | 1 | |||
| other | S | 141 (121) | 153 (131) | — | 0 | ||
| total | — | 287 (263) | 186 (159) | 17 | 13 | ||
[i] Full details of all changes are given in the supplementary material.
[ii] Only five genes were unique.
[iii] Includes only genes that met the original criteria for a suggestive change. An additional six probe sets met the modified criteria for a suggestive decrease in expression, including two potential primary changes. A further five control probe sets also passed the modified criteria (see supplemental Fig. 1 [http: //www.gen.cimr.cam.ac.uk/todd/]).