Table 3.

Candidate Probes in Splice Variants Predicted from 10 Normal Rat Tissues

Probe set Tissue FR Y X Probes/cluster Probes/gene
M26052 Bladder−3.7547752–611010
D13906 Kidney2.39815112–11433
J03588 Kidney−3.10637131–13333
M32801 Kidney−2.9418524–2633
M32801 Liver2.5438524–2633
M34007 Testis−2.642209213–21533
X07467 Liver−2.9165152–15433
X62908 Heart−2.6179133–13533
D16478 Placenta−3.63417194–19522
D30035 Heart−3.71721225–22622
K03245 Kidney−3.80824196–9722
K03245 Liver3.84224196–9722
V01218 Bladder−4.33257103–10422
Z32519 Testis−3.33419936–3722

[i] The list contains the top 12 candidates selected from the pool of predicted splice variants in Table 2 based on a decision matrix: i, probes/cluster (from high to low); ii, probes/gene (set equal to probes/cluster); iii, log final ratio FR (>ln10). The identity of each probe set is represented in the first column as Gen Bank accession no.; (Tissue) the tissue type from where the splice variant was predicted; (FR) log final ratio; + and − values represent presence and absence of expression, respectively. X and Yrepresent coordinates of individual probes on the chip detecting a splice region. Probes/cluster and Probes/gene indicate the number of adjacent probes and the total number of predicted probes for the gene, respectively.