Table 3.

Detection of Spurious Triangular Relationships in thePyrococcus Genomes

P. abyssi P. horikoshii P. furiosus
Common set 1445 1419 1525
Biased ΔAF/ΔHF values  only10899118
Nonreciprocal  homologs only5558125
Both methods654554
Total228202297
Putative true  orthologs 1217 1217 1228