Markup | Genome Research

Table 3.

Progress of Automated Contig Assembly, Marker Content, and Map Segments of MPI-MG Integrated Mouse YAC Map

Chr	(a)	(b)	(c)	(d)	(e)	(f)	(g)	(h)	Total (edited)	mbacr[ii]	whtII[ii]	bir[ii]	173r[ii]	Map segments[iii]
MMU1	7396	1855	635	1153	1335	1340	1544	1550	1457	128	616	43	3	43
MMU2	7548	1835	600	1179	1377	1396	1640	1661	1565	157	685	77	1	52
MMU3	7943	1548	398	891	1150	1183	1369	1375	1277	132	616	29	72	34
MMU4	6243	1381	400	826	1026	1055	1257	1266	1153	148	515	64	0	39
MMU5	6676	1920	422	969	1095	1105	1347	1355	1278	151	538	129	0	36
MMU6	6295	1150	471	782	853	865	996	1009	964	77	380	23	0	30
MMU7	7252	1369	416	829	1007	1025	1235	1250	1142	128	498	64	0	30
MMU8	6789	1132	376	705	838	862	994	1009	919	110	340	64	0	29
MMU9	6542	1509	398	937	1221	1239	1465	1486	1300	158	547	144	0	27
MMU10	7814	1081	320	613	762	785	938	944	879	101	400	40	0	35
MMU11	7749	1997	518	1248	1506	1523	1755	1770	1626	206	674	174	1	24
MMU12	7810	1631	367	918	1211	1230	1469	1486	1311	212	615	87	0	27
MMU13	6797	1379	425	871	1040	1043	1184	1199	1155	136	507	60	0	28
MMU14	6714	1395	323	840	1063	1081	1298	1333	1172	152	569	81	0	30
MMU15	6400	1079	332	678	788	809	925	938	916	88	426	46	0	29
MMU16	4846	914	318	622	692	693	776	788	755	99	286	37	0	23
MMU17	5831	954	198	507	724	738	810	819	814	73	361	46	118	19
MMU18	7006	1001	270	530	699	708	875	885	841	90	410	33	1	18
MMU19	3861	535	158	315	395	402	451	460	444	56	190	18	0	15
MMUX	4204	767	241	553	645	646	740	750	683	37	307	82	0	27

[i] Columns a–h give the number of markers for each chromosome at a particular stage of the analysis. Column stage (a) crude probelist; (b) sorted contigs; (c) Nusbaum et al. framework; (d) increment, first round; (e) increment, second round; (f) increment, third round; (g) addition of unassigned probes; (h) addition of linking probes. Total, marker content on final edited maps (sum of markers from MPI-MG, Hunter et al. [1996] and Nusbaum et al. [1999])

[ii] Number of MPI-MG markers (see Table 1) on edited chromosome maps.

[iii] See http://www.molgen.mpg.de/∼rodent/result/genome.html