Table 3.

Sequence Comparisons between the 10 Most Conserved Regions of RH Proteins

A.
% GKT PTREL TPGR DEAD SAT RI RII RIII RIV HRIGR
AtRHsId.44–5224–4117–6625–3824–4622–2223–3933–4860–6539–65
Sim.68–7241–6227–8353–6255–5543–5041–5955–5580–9061–74
CeRHsId.28–4221–6220–4631–5330–3929–2915–3126–4340–8548–74
Sim.54–5838–8339–6353–6955–6436–3641–5152–5760–9065–82
DmRHsId.35–82—20–3124–3319–19—24–3840–70—61–67
Sim.73–96—65–6779–7958–66—64–7085–95—78–89
AtRHs/Id.39–5937–5320–3719–7821–4829–4323–7136–6448–8665–65
 CeRHsSim.51–8053–6327–4641–8455–7843–5040–8950–8157–9065–83
AtRHs/Id.28–5871–7134–4924–4826–36—17–4323–2350–5561–83
 DmRHsSim.72–8293–9352–7870–7971–73—52–6746–4690–9089–100
CeRHs/Id.36–5650–5020–5630–4518–79—12–3122–2240–9053–61
 DmRHsSim.64–8075–7557–8870–7959–94—44–5243–4385–10074–84
B.
 GKTAtGαerPTpIQAaAβPβββx()Gr()DββGaArTGSGKTLAFlPββexβxxxxx
CegixtPTpIQaaαIPxββe()Gr()DββGxAxTGSGKTLAFβPββxxβlδxxx
DmGɛxxPTpIQαxαIPββLx()Gr()DββgxAxTGSGKTlAFlPβlxxβxxxxx
 PTRELAtaprALIxαPTRELAxQvx()xxxxxβαkxx
CeglqAVlβvPTRELAxQIf()kEflklgdyl
DmxxxALvβαPTRELAxQIx()xxxxxxxxxx
 TPGRAtgβrvxvβGGαxxpxQxRxLxrG()pδIβVαTPGRβxDhβExα
CeNβkvxcaIGGgkIdEqiadlkG()aeβVVαTPGRβiDββqkg
DmxβrxαββGGαxxxqxxxxlxxg()xdiββaTPGRlβDββxxx
 DEADAtLdnLkγLVβDEADRβLdxx()G()FedqβxxββqxβP
CelxxβrγLVβDEADRRMldx()g()FEdqβxxβxnxβP
DmlxxβxγLVLDEADRmLdβx()G()Fexxβxxixxxβx
 SATAtpxRQTlLFSATxpseVx()xLxLarfkδPvkixxv
CexqkQTβLFSATFPreβq()xfAKkxβdδPβeVmVg
DmxxrqtββfSATβpxxvx()xlaxxxLxδpβxβxβα
 RIAtxtxxg()βxQefvvxx
Cekpter()VeQvvymVP
Dmxααxx()βxqxβxxβx
 RIIAtxekkxxLlxlLβx()KxβIFcxTKrxvdxLxx
CedeKkakββelLkn()KvβIFcqTKrdVDaβAe
Dmδxxkxxxlβxlβx()xβxiFcδtkxxβdxlαx
 RIIIAtlLxxlG()βkAxxβHGδβtQsxRlkaLxxFRaGxxxxLβATDVA
CeββRsgG()βpαβsβHGdqδQeeRdxαLnqFKsGkyqβββATDVA
DmxxαβxG()βxxxxβHGδβxQxeRδxxβxxFrδgxxxβLβATDVA
 RIVAtARGβDv()PxVxlVVQYδlPnd
CeαRGIDV()qDVxLVINYDβPnN
DmaRGLDβ()βxvxxVINYDxPxx
 HRIGRAtsEdYβHRVGRαGRaGrkG
CeIEDYIHRIGRTGRαGkKG
DmxeδYbHRβGRTGRβGxxG

[i] Minimum and maximum identities and similarities are given. The consensus sequences of the 10 regions have been obtained from multiple alignments of the proteins translated from the 3 nonredundant sets of genes with intron in the 10 regions. The accepted conservation is: α, A/T/G/S: β, I/L/M/V; δ, D/E/N; γ, F/Y/W. The letter x denotes any amino acid. Brackets indicate gaps inserted in the alignment to build up the consensus. A dash denotes the absence of a sequence with intron in these conserved regions.