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Table 3.

Distribution of Hammerhead and Hammerhead-like Motifs in the Different Sections of the GenBank: Mutants of Helices II and III

	pri	rod	mam	vrt	inv	pln	bct	rna	vrl	phg	syn	una	est	pat	sts	gss	htg	Total	Total over expected	Expected (A = C = G = T)
HH-I	51	21	0	14	176	119	130	0	37	3	5	0	186	45	4	17	108	916	0.56	1635
HH-I-iiAU	569	100	30	36	822	545	426	3	58	7	8	0	1113	93	32	341	544	4727	2.56	1851
HH-I-iiCG	343	59	12	20	203	117	512	11	24	2	1	11	669	69	15	66	221	2355	1.27	1851
HH-I-iiGU	452	65	9	38	361	227	203	0	73	3	49	2	794	58	15	93	332	2774	1.77	1564
HH-I-iiUA	606	124	21	82	406	364	260	2	165	10	2	0	941	43	15	175	436	3652	2.03	1797
HH-I-iiUG	455	69	25	38	354	268	287	4	57	6	24	2	664	47	9	92	268	2669	1.43	1869
HH-I-iiiCG	51	19	5	6	91	63	163	0	43	2	2	0	355	77	1	10	27	915	0.48	1887
HH-I-iiiGC	121	53	13	13	103	116	189	1	48	1	6	0	494	60	2	28	52	1300	0.74	1761
HH-I-iiiGU	77	31	18	12	98	116	130	0	21	0	0	1	284	44	1	17	64	914	0.58	1564
HH-I-iiiUA	52	23	2	8	118	89	79	2	13	0	8	0	177	28	2	18	38	657	0.39	1707
HH-I-iiiUG	36	19	4	6	100	63	155	6	21	2	152	0	154	73	1	19	90	901	0.50	1797
HH-II	83	33	1	5	175	126	141	1	80	1	1	3	435	30	4	8	91	1218	0.54	2246
HH-II-iiAU	719	117	40	39	860	572	453	0	118	13	2	0	1021	87	24	190	663	4918	2.76	1779
HH-II-iiCG	404	97	21	25	183	113	148	1	50	1	7	0	856	38	20	83	284	2331	1.34	1743
HH-II-iiGU	560	96	36	39	352	270	237	1	192	5	1	0	783	35	15	124	367	3113	1.77	1761
HH-II-iiUA	668	126	133	39	465	382	308	4	85	10	22	1	843	66	21	248	462	3883	2.12	1833
HH-II-iiUG	694	123	36	24	335	239	260	1	71	0	5	0	749	67	17	212	319	3152	1.81	1743
HH-II-iiiCG	65	28	3	14	96	45	215	2	15	4	1	0	159	10	1	20	49	727	0.40	1833
HH-II-iiiGC	136	67	16	21	92	103	232	0	20	7	1	2	498	51	2	19	72	1339	0.71	1887
HH-II-iiiGU	69	42	3	12	101	88	182	0	33	6	2	0	365	30	1	19	65	1018	0.48	2103
HH-II-iiiUA	60	16	3	11	107	78	102	1	27	0	0	0	136	8	1	21	65	636	0.35	1833
HH-II-iiiUG	50	22	4	27	85	77	129	0	39	0	0	0	154	23	0	17	63	690	0.30	2282
HH-III	42	6	0	2	93	67	65	0	21	1	2	0	96	57	3	8	64	527	0.55	952
HH-III-iiAU	360	59	17	11	482	324	241	0	35	7	11	1	723	31	6	354	328	2990	5.05	593
HH-III-iiCG	203	37	4	9	98	58	101	0	9	0	0	0	469	8	6	42	132	1176	1.17	1006
HH-III-iiGU	251	29	3	19	194	126	121	0	43	4	0	0	440	40	13	52	217	1552	1.73	899
HH-III-iiUA	333	48	10	23	246	224	153	13	39	1	0	0	486	22	5	70	257	1930	2.24	863
HH-III-iiUG	285	56	11	31	212	139	113	0	29	0	1	0	399	27	8	63	148	1522	2.02	755
HH-III-iiiCG	23	9	2	3	45	22	108	0	8	1	0	0	158	52	1	7	19	458	0.50	917
HH-III-iiiGC	78	14	24	15	38	66	100	0	12	2	1	0	173	27	2	18	38	608	0.57	1060
HH-III-iiiGU	52	18	10	13	47	51	83	1	18	1	11	1	235	7	4	9	43	604	0.53	1150
HH-III-iiiUA	43	15	7	3	72	64	137	2	8	3	304	0	98	133	3	18	126	1036	1.56	665
HH-III-iiiUG	26	17	6	5	40	33	82	3	17	1	152	0	97	64	4	8	58	613	0.67	917
GenBank relative size	0.14	0.03	0.01	0.01	0.07	0.07	0.07	<0.01	0.03	<0.01	<0.01	<0.01	0.37	0.02	0.01	0.06	0.10	1.00

[i] See legend of Table 2 for explanation of abbreviations.