Table 3.

Summary of Genomic Sequence of BAC/PAC Clones from the VDWS Critical Region

Clone Accession no. Status[i] Length[ii] Gene content[iii]
BAC 55i10 AL035408 100%280944 VWS33, VWS34, VWS1, VWS19, LAMB3
PAC 272L16 AL023754 C157875 VWS1, VWS19, LAMB3
PAC 28o10 AL031316 C180130 VWS1, VWS19, LAMB3, G0S2, VWS25, HSD11, ADORA2BP
PAC 434o14 AL022398 C135928 HSD11, ADORA2BP, VWS17, VWS14, HIRF6, VWS2
BAC 447d17 AL022728 C161081 HSD11, ADORA2BP, VWS17, VWS14, HIRF6, VWS2
BAC 321i20 AL035046 C169488 VWS18
PAC 782d21 AL022399 C165590 VWS18, VWS23, VWS20
BAC 11c7 AL022397 C109302 VWS18, VWS23, VWS20
BAC 501d19ends only∼175000 VWS30, VWS31
PAC 667h12 AL035414 >95%∼143000 VWS31, VWS35, HIPP, VWS37, VWS38, RNASEH1P, VWS40
PAC 879k22 AL034351 C137679 VWS42, VWS41

[i] Clone statuses are either completely sequenced (C) by Sanger Centre and deposited in GenBank as a single continuous sequence, 100% completed by Sanger Centre except for some sequence derived by walking as detailed herein, sequence >95% completed by Sanger Centre, or sequenced at ends only.

[ii] The clone length is based on sequence analysis, except for clone 501d19, which is based on PFGE.

[iii] The gene content is based on sequence similarity searches for all clones except 501d19, which is based on STS content analysis.