Table 2.

Class I TE Nomenclature

Class (mode of transporation) Group IN/RT order Subgroup RT phylogeny Genus >∼50% RT amino acid ID Superfamily >∼75% RT amino acid ID Family >∼90% RT amino acid ID Individual element
I (RNA)I (RT/IN)Gypsy–Ty3 APao Pao
BEL Bel
Tas Tas
Cer7 Cer7.0
Cer8Cer8Cer8 Cer8.0
Cer9 Cer9.0
Cer10Cer10Cer10 Cer10.0
Cer10.1
Cer11Cer11Cer11 Cer11
Cer12Cer12 Cer12
Bdirs-1dirs-1dirs-1 dirs-1
PATPATPAT PAT
Cgypsy gypsy
Ty3 Ty3
Cer1Cer1Cer1 Cer1
Cer1.1
Cer2Cer2Cer2 Cer2
Cer3 Cer3
MagMagMag Mag
Cer4Cer4Cer4 Cer4
Cer5Cer5Cer5 Cer5
Cer5.1
Cer6Cer6Cer6 Cer6
Cer6.1
D (vertebrate Lenti
 retrovirus)B-type
Spuma
MLV
Fish
D-type
ASLV
BLV–HTLV
II (IN/RT)Copia–Ty1 Ty1 Ty1
Copia Copia
III (Non-LTR)