Putative Cases of Gene Overlap in the 3‘UTR (Truncated)
| Accession no. hoG/direction | Annotation and functional notes | Chr. | Map information | Overlap (% identity) |
| X66397 | TPR (tpr) mRNA, involved in activation of oncogenic kinases | 1 | GDB:1006915 | |
| U69668 | human nuclear pore complex-associated protein TPR (tpr) mRNA | 1 | GDB:1006915 | |
| R.C.U70136 | megakaryocyte growth and development factor | 3 | 3q26.3–q27 | 142 bases (100%) |
| M63960 | human protein phosphatase-I (PPPI) catalytic subunit mRNA, complete coding sequence | |||
| J04759 | human PPPI α subunit (PPPIA) mRNA, 3‘ end | 11 | ||
| X70848 | human mRNA for PPPI catalytic subunit | |||
| S57501 | PPPI catalytic subunit | |||
| R.C.U53174 | human cell cycle checkpoint control protein mRNA, complete coding sequence | 231 bases (99%) | ||
| U40282 | integrin-linked kinase (ILK) | 11 | 11p15.5 | |
| R.C. U25816 | TATA-binding protein-associated factor 30 | 11 | 11p15.5 | |
| R.C.U13991 | TATA-binding protein-associated factor II 30 | 11 | 11p15.5 | 25 bases (100%) |
| L39891 | Homo sapiens polycystic kidney disease-associated protein (PKD1) gene | 16 | 16p13.33 | |
| U24497 | human autosomal dominant PKD1 | 16 | 16p13.3 | |
| L33243 | H. sapiens PKD1 mRNA | 16 | 16p13.3 | |
| R.C.L48546 | H. sapiens tuberin (TSC2) gene | 16 | 16p13.3 STS: G27421 | 61 bases (100%) |
| L41816 | CaMK I | |||
| R.C. AB000410 | hOGG1, involved in the repair of oxidative DNA damage | 58 bases (100%) | ||
| S70154 | human t-complex polypeptide 1 gene | 6 | 6pter | |
| R.C. X52882 | cytosolic acetoacetyl–coenzyme A thiolase | 6 | G30038, G11124; 6q25.3 | 92 bases (98%) |
[i] Using the annotation, the 3‘ UTRs of full-length genes were extracted from UniGene 101 and subjected to cluster analysis. Twenty-one cases of possible gene overlap in the 3‘ UTR were isolated by looking for reverse complement matches in clusters. The R.C. notation prefixing the accession number signifies that the relative orientation is opposite that of genes without R.C. Where multiple accession nos. match the same gene, all are listed. Annotation, chromosomal assignment and mapping information, and number of bases overlap with sequence identity of match are given when available. For brevity, only a small portion of the result is shown here. The full table may be viewed as supplementary information athttp://www.genome.org.