Simulation Default Parameters
| 35-nucleotide overlap required for sequence joining |
| 10-fold genome coverage |
| 400-nucleotide read lengths |
| 15% variation in insert sizes |
| 10,000-nucleotide average size for long inserts |
| 700-nucleotide average size for short inserts |
| 1:1 ratio of long to short inserts |
| 100 kb spacing between STSs |
| 300-nucleotide STS length |
| 20% of genome comprised of SINEs with 300-nucleotide lengths |
| 5% of genome comprised of LINEs with 1500-nucleotide lengths |
| 4:1 ratio of SINEs to LINEs |